Nothobranchius furzeri (turquoise killifish): 107391974
Help
Entry
107391974 CDS
T05163
Symbol
shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nfu04121
]
107391974 (shprh)
Enzymes [BR:
nfu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107391974 (shprh)
Ubiquitin system [BR:
nfu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107391974 (shprh)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
PHD
zf-C3HC4_2
zf-RING_2
zf-RING_5
TPR_10
SfNPV_sf27
TPR_12
Motif
Other DBs
NCBI-GeneID:
107391974
NCBI-ProteinID:
XP_015824994
UniProt:
A0A9D3BBK3
LinkDB
All DBs
Position
sgr16:complement(19335600..19347219)
Genome browser
AA seq
1662 aa
AA seq
DB search
MSSRRKRAPPARVDEDAKRQLEWNMFEDRKNEEIQEEDQTPSCSILSVDTTPGSSFLSVV
EDVTEAPCSRSVRFSEEFPSTASDSTSALPSLALSVLPALKLAHIWKALIGEFIIRPVWL
SSDYEWKVFTVHRKGEQLYLSYSSCDESSDLQWRPDDDSCTAECNLSRILLEELDWLQKR
RVVQLCHQTKDQEVKVGIYLLETGLGKPDFLSEGNARLKKANQLMQKLMEYFYDFIIPEV
VENEEEESDTDLERQNVEELYDHVRLVHQKENQGATYDVQHKALIPFLRRYQSQAVNWML
RREKYRNTAPKEQFLHFLWRELITLCGKKLFYNPFTGCLIREFPLAGVDWPGGILADEMG
LGKTVEVLALILFHTRQDLQQDAFTLPVGKSVNYFVPPRPLERENAIRCKSEAQPKMKIS
HPTVRVMLLNAIKEMRSGKGASVNAVFTYIRATYGFDLLKNRNHIKKTLAKLIDEGVVQR
VKGRGLAGSFKLGKNFKETKKTLAGATKSVRSFKNAESTPRKTFQRRAKEKAEAALQSSL
SEDQKDLSSEADCLEAEGRDECLSGKTNQPEDVRETSSATFQMSQDDSDILDVARVDGLP
AEREASQTESREGTETPTRASLAPFHTPDYRFECICGELGIIDYKARVQCMNCQLWQHAD
CVNYKEESLTTTPFYCPHCLVAMKPVSTGATLIISPSSICYQWVEEINRHIRSSSLRVLV
YQGVKKHGFIQPRMLAEQDVVITTYDVLRSELNYVDIPHSNSKDGRRFRNQKRYMAVPSP
LVAVEWWRICLDEAQMVECPTAKAAEMALRLASVNRWCVSGTPVQRGLEDLYGLVLFLGV
DPYWVKHWWDQLLYRPYRRGNTEPLYNVVAQILWRSAKKDVIDQIQIPPQTEEVHWLRFS
PVEGHFYHRQHEVCSQDALVKLRKISDWSLKLGSLDRRTVTTILYPLLRLRQACCHPQAV
RGEFLPLQKSTMTMEELLKSLQKKCRVECEEAHRQLVCALNGLAGIHIIRGEFGEAAEMY
REVLRSSEEHKDRLKTDSLQRLHATHNLIELLNAKHAGIPPTLRDDRLNEEAEQLRQHYM
TKYDSEVVDAHQALQPVLQNIKDLKRKVNLNSPWWLEVVQRSVRCSTDDDLVSRVQNELT
CSYKQQPNKLSMADKFRDASGLQFLLTTQMQDLMKSQKTVRDAVKSLEGPASKEVIEEAT
VCHLRPMRLPLNNCVFCKADELFTDYESKLFAHTVKGQTAIFEEMIEDEEGLVDDRLPTT
SRGLWAASETERTLKAILSFSKAKRMDPELVEEGNTFMELFENWKKEYKVLHEYWMVLRN
HVSAIDELGMATERLRVRLPDEPKPKLLHIIEPHEVEQNRVKLLNDQAVAKSQLQKKLGQ
FLYLTNLEKSQDKSTGGLNPEPCPICARPLGQEWAVLTCGHCFCNECIAIIVEQYSVGSR
RRAIKCAICRQTTSHTEISYVFTTHSSSHNQEIPVKGSHSTKVEAVVRTLKGIQMTDPGA
KCLVFSTWQSVLDIIAKALFDNNMDFSQINGIHRFQENLTSFKYEEKINILLLPLHTGSN
GLNIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAMLKTA
EKSHTSTTMRHSEAAVLTVADLADLFTDDTEPLELPQTAGCS
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgaagaaagagggccccacccgcgagggtggatgaagatgccaagagacag
ttggagtggaacatgtttgaggatcgcaagaatgaggagatccaggaagaggaccagacg
ccatcctgttccattctttcagttgacaccaccccgggcagctcttttctctcagttgtt
gaagacgtgacggaggctccctgttcccgatctgttcggttttcagaagagtttcccagc
accgcctcagacagcacctctgccttgccctcgctggcactgtccgtgctgccagctttg
aagctggctcacatctggaaagccctcattggggagttcatcattcgaccggtttggcta
tcatctgactatgagtggaaggtttttacagttcacaggaaaggtgagcagctctacctc
agttacagcagctgtgatgagagctcagatctgcagtggaggccggacgacgacagctgt
acagccgagtgtaacctcagtcggattctgctggaagaactcgactggctgcagaagagg
agggtggtgcagctctgccatcagaccaaagatcaggaagtcaaggtgggaatttacctg
ctggaaactggactcggaaagccggatttcctcagtgaggggaatgctcgtctgaagaaa
gcaaatcagctgatgcagaaattaatggaatatttctacgatttcatcattcctgaagtt
gtagagaatgaagaggaagagagcgacaccgacctggagagacagaatgtggaggaactt
tatgatcacgtgagactcgtgcaccagaaggagaaccagggtgcgacctatgatgtccag
cacaaggctctcattccatttctcagacggtatcagagccaggcggtcaactggatgctg
aggagagagaaatacaggaacacggctcctaaagaacagtttttgcatttcctctggcga
gagttaattactctgtgtggcaagaagctgttttacaatcctttcactggctgtttaatt
cgagagtttcctctggctggtgtcgactggcctggggggattctggctgacgagatgggg
ctcggtaagactgtggaggttttggcgctcatcttgtttcacactcgtcaggacctgcag
caggatgccttcacgctgcctgtgggaaaatctgtgaattattttgttcctcctcgcccg
ctggaaagagagaatgccatacgctgcaagtctgaagctcagccgaagatgaaaatatcc
cacccaactgtgcgcgtcatgctacttaatgcaataaaggagatgcgatctggcaaaggc
gcctcagtcaacgccgtattcacctatatccgagctacttatggcttcgaccttctgaag
aaccgcaatcacatcaagaagacgctggcgaagctcatagatgagggcgtggttcagagg
gtcaaaggtcgaggcttggccgggtcattcaagctgggaaagaacttcaaagaaaccaag
aaaactttagcaggcgcgaccaagtctgtaaggagttttaaaaatgcagagagcacaccc
aggaaaacgtttcagagacgagccaaggagaaggctgaagcagctctgcagagctctctc
tcagaggaccagaaggatctaagctctgaagcggactgtcttgaagcagaaggacgggac
gagtgtctgagcgggaaaactaatcaaccagaagatgtgcgggagacctcctcagcaacc
ttccagatgtctcaggatgactctgacattctggatgtggccagagtcgacggtttacct
gcagaaagagaagcttctcagactgaatcacgtgaggggacagaaactccaaccagagct
tctctagctccgttccacacccccgactaccgctttgagtgtatttgtggagagttgggc
atcattgactacaaggcccgtgttcagtgtatgaactgtcagctgtggcagcacgcagac
tgtgtgaactacaaggaagaaagcctcacaacaactccgttctactgcccacactgcctg
gtagccatgaagccagtatccactggtgccacgctcatcatttcccccagctccatctgc
taccagtgggtggaggagatcaaccggcacatcaggtcctcctctctacgggtgctggtt
tatcagggcgtgaaaaaacacggattcatccagccgcgaatgctcgccgagcaggatgtg
gtcatcaccacctacgacgtgctccgctctgagctcaactacgtcgacattcctcacagc
aacagcaaagatggccgccgcttccgcaaccagaagcgctacatggctgtacccagtccc
ttggttgccgtggagtggtggcgcatctgtctggacgaggctcagatggtggagtgtccc
accgccaaggctgcagaaatggctctgcgtctcgcatctgtcaaccgctggtgtgtcagt
ggcacgcccgtccagaggggcttggaagatctgtatggactggtgcttttcctcggagtt
gacccatactgggtcaaacactggtgggatcagctgctttaccgcccctatcgtcgtgga
aacacagaacccctgtacaatgtggttgcacagatattatggcggtcagctaaaaaagac
gtcattgaccagattcagattccccctcagacagaagaggtccactggcttcgcttttcc
cccgttgagggtcacttctaccaccggcagcacgaggtctgctcccaggacgctttggtc
aaactcaggaaaatctcagactggagcctgaaactcggcagtctggaccggcgcaccgtc
accaccatcctgtacccgctgctgaggctgcggcaggcctgctgccacccgcaggccgtg
aggggggagtttctgcctctgcagaaaagcaccatgacaatggaggagctcctcaagtcc
ctgcagaagaaatgtcgagtggagtgtgaagaagctcacagacaattagtgtgcgcactc
aatggcttggctggaattcacatcatcagaggtgagtttggagaggctgcagagatgtac
agagaagtgcttcgttcatcagaggagcacaaagacaggctgaaaaccgattcgctgcag
aggctccacgccacccacaacctgatcgaacttctaaacgcaaagcatgctgggattcct
ccaactctgagggacgaccgactcaacgaagaggccgagcagctgcggcaacactacatg
accaaatacgactctgaggtcgtcgacgcccaccaggccttgcagccagtgctgcagaac
atcaaagacctgaaacgaaaagttaatttaaactctccctggtggctggaggtcgtccag
aggtcggtgcgctgctccacggacgacgacctggtgtcccgcgtccagaatgagctgacc
tgcagctacaaacagcaacccaacaagctctccatggcagacaagttccgtgatgccagc
ggtttgcagtttctgctcaccacccaaatgcaggacctgatgaagtcccagaagaccgta
cgagatgcggtgaagagtctggagggtccagcttctaaagaagtcatcgaagaagccacc
gtttgccacctcaggcccatgaggcttccactcaacaactgtgtgttttgcaaagcagac
gaactcttcactgattatgaatccaagctgttcgctcacacggtgaaaggtcagacggcc
atctttgaggagatgatcgaggacgaagaaggtttggtggacgaccgtctccccaccacc
agccgcggcctgtgggcggccagcgagacggagcgcaccctgaaagccatcctttcgttt
tctaaagccaagcgcatggacccggagctggtggaggaggggaacacttttatggagctg
tttgagaactggaagaaggagtacaaggtgctgcacgagtactggatggtgttgcggaac
cacgtgtcggccattgacgagttgggaatggccaccgagagacttcgtgttcgtctgcct
gatgagcccaaacccaaactgctgcacatcatcgagcctcacgaggtggagcagaacaga
gtcaagcttctgaatgaccaggctgtggccaagtctcagctccagaagaagctagggcag
tttctgtacctgaccaacctggagaagtcacaggacaagtcaaccggagggctgaaccca
gagccgtgtcccatctgtgcccgacctctgggtcaggagtgggccgtgctgacttgtggc
cactgcttctgtaacgagtgcatcgccatcatcgtggagcagtacagcgtgggctcaagg
cggcgagccatcaaatgtgccatttgcaggcagaccacatcccacacagaaatctcctac
gtgttcaccactcattcatccagccacaaccaggaaataccggtcaagggaagccactcc
accaaagtggaagcagtggtgagaacgctgaaggggattcaaatgaccgaccccggagcc
aagtgtctcgtcttctccacgtggcagagtgtcctggacatcatcgccaaggctttgttc
gacaacaacatggacttttcacagatcaatggaattcacagattccaggagaatctcact
tctttcaagtatgaagagaagatcaacatccttctccttcctctccacacgggctctaat
ggactgaacatcatcgaagcgacgcacgtgctgctggtggagccgatcctcaacccggct
catgagctccaggccatcggcagggtgcaccggatcggacaaaccaagccgacgtttgtt
cacagatttctcatcaaatccacgatcgaagagaggatgcaggcgatgctgaagacagca
gaaaagagccacaccagcacgacgatgaggcactccgaggccgccgttctgaccgtggcc
gacctggccgatctgtttactgatgacactgaacctctggagttaccccaaacagctggt
tgctcttaa
DBGET
integrated database retrieval system
