Nothobranchius furzeri (turquoise killifish): 107392526
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Entry
107392526 CDS
T05163
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03013
Nucleocytoplasmic transport
nfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107392526 (srrm1)
03015 mRNA surveillance pathway
107392526 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107392526 (srrm1)
03041 Spliceosome [BR:
nfu03041
]
107392526 (srrm1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107392526 (srrm1)
Spliceosome [BR:
nfu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
107392526 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
107392526
NCBI-ProteinID:
XP_015825869
UniProt:
A0A1A8VHG8
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Position
sgr16:complement(36528852..36538371)
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AA seq
860 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMGDLWPLLLSAQENIAGIP
SAFLEQKKEEIRQRQIEQEKLASLRKVDEDKKDKDTRERAQSKSPRRRKTRSPSPRRRSP
AKRERKRSPSRSPRRKPSPLSANSPAPPLMQSSTRASQQLVEADTSEKEPTEPVIQEASS
TGDAVVELVKADSVSEVKETSPEKSHKKEERPRSREKDVRKERPHHRSPSPSHSRSHRRR
SRSRSYSPRRRQSPRRRMSPRRWSPPRRGPAGSRHRPRRSPVRRRRSRSASFSGSSSSGS
RSPKKPVKRISPTPPRKQVRRFDTSISPAPKDKRSLSPRARRGRRSPSPLMSLGLKQKQR
RMDDSPPANAKARASDGSDSEEDKNEKGATADSVQQRRQYRRQNQQSSSDSGSSSSEDEG
PKRSATGPGARNGEVRRRRSRTPSPRRRHRDASPRRRRSPSPGRRRRSPSPPRRRRSPSP
RRRSPSPPPRRRSMSPRRYSPPIQRRYSPSPLPPAKRKLSSSPLRRSSPGSKRRFSRSPK
RRSSPGPRRRSPPSSTSPPRHKRSPMPARPGRDTRSPVASARRLSPSPANRSRAVRRSTS
PQGRFASSSTSPSNQRRQPSPSRSSKLIRRVSRTPEPHRKRTSPSPKQMRRASSRSRSVS
PLPAPQKGPAPASASPSPSRSVSGSPPPPPVKKPSSASGSPSPSKISDVEGGGKKKKKKK
EKKHKKEKKHKKHKKHKKEKSSGGAVPGDVAENRGAEEDGESRKDSDSDADDGLDDLEKH
LREKALRSMRKAQMSPSQMS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacgagtgcggagcaggacaaccgtttcagcaacaag
cagaaaaaactactgaagcagctgaaatttgcagaatgtttggacaagaaggtggacatg
accaaagtcaacttggaagtcatcaaaccgtggattacccaacgtgtgacagagattctt
ggctttgaggatgatgtggtcattgagttcatattcaaccaacttgaagagaagcatcct
gatagtaagatgatgcagatcaacctgacagggtttctgaatggcaagaacgcccgtgag
ttcatgggagacctgtggcccctgctgctgagtgcccaggagaacattgctggcatcccg
tctgctttcctggaacagaagaaggaggaaatccgacagagacagattgaacaagagaaa
ctggcttccctgagaaaggtggatgaggacaagaaggataaagacaccagagagagggct
cagtccaagagcccaagaaggaggaaaaccaggtcaccatcaccacgacgaaggtcgcct
gccaaacgggaaagaaaacgcagcccgtcacgctccccaagacgcaaacccagtccgctc
agtgcaaactcacccgccccacctctgatgcagtcttccactagagcctcacagcagctt
gttgaagctgatacttcagagaaagagccgactgagccggttatccaagaagcttcttct
actggtgatgcagtggtggagttggtaaaagctgactcagtttctgaggtcaaagaaaca
tccccagaaaagtctcacaagaaagaggagaggccgagatctcgtgaaaaggacgtgagg
aaggagagacctcaccatcgttcaccctccccgtctcattcccgctctcacagacgacgc
tctcgctcaaggtcgtactcccctcgtagaagacaaagtcccagaaggagaatgtctcct
cgacgatggagtcctcctagacgcggcccggctggctctagacatcgacctaggcgttcc
ccagtccgcaggagacgctctcgttctgcctcgttttctggcagcagctcctctggttca
cgttcacccaaaaagcctgtgaagagaatatcccccacgcccccccgtaaacaagtccgc
cgttttgacacgtctatcagtcccgcaccaaaggacaagcgatcgctgtctccacgagca
agaagaggccggaggtctccttcccctctcatgtcattgggtttaaagcaaaaacaaaga
agaatggatgattctccacctgctaatgcaaaagcacgagcttctgatgggtctgactct
gaggaggacaaaaatgaaaaaggggcaacagccgactcggtgcagcagagacgtcagtat
cgcaggcagaatcagcaatcttcttcagattcaggatcttcatcatcagaggatgaggga
cctaagaggtcagctacagggccaggagccagaaacggtgaagtgaggaggaggcgtagc
cgcacaccatcacctcgtaggcggcatcgggacgcctccccaagaagaagacgttctcca
tctcctggacgtagacgtcgctctccatctcccccacgccgccgcagatctccctctcct
agacgcaggtctccttcaccgccaccacgtcgtagatctatgtcccccagacgttactct
cctcccatccagcgccgctacagcccctcacctttgcctccagcaaagaggaagttgtct
agctcacccctgagacgctcctctccaggttccaagcgacgtttctctaggtctcctaaa
cgcagaagctctcctggtcctagacggcgctctcctccttcgtccacatctccaccccgt
cacaaaaggagccccatgccagccaggccaggcagggacacacgatcccctgttgcgtct
gccagacgcctgtccccctcacctgcaaaccgcagtcgggctgtcagacgatccacgagt
ccccagggacgctttgcttcttctagtacatctccatctaaccagaggcgacagccgtcc
ccttcacgcagcagcaagctcattcgcagggtgtcccgcactccagaaccacacaggaag
agaacttcaccaagtcctaagcaaatgaggagagcatcatccagatcgaggtcagtctcc
cccctgccagctccgcagaaaggtccagctcctgcttccgcctccccatctccttctcgc
tcagtcagtgggtctcccccacctcctccagtcaaaaaacccagtagtgcttcaggcagc
ccgtctccaagcaagatatcagatgttgaaggtggcggaaagaaaaagaagaagaagaag
gaaaagaaacacaagaaggagaagaaacacaaaaaacacaagaaacacaagaaggagaaa
agcagcgggggtgctgttccgggagacgtagcggagaatcgcggtgcggaggaggatgga
gaatcaagaaaggactcagacagtgacgccgacgacggcttggacgatctggaaaaacat
cttcgagagaaggccctgcgctcgatgaggaaggcccagatgtctccatcacaaatgtca
tga
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