Nothobranchius furzeri (turquoise killifish): 107392626
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Entry
107392626 CDS
T05163
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nfu03009
]
107392626 (pdcd11)
Ribosome biogenesis [BR:
nfu03009
]
Eukaryotic type
90S particles
Other 90S particles
107392626 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Spt6_S1
Suf
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
TPR_16
UTP6_C
NRDE-2
TPR_CcmH_CycH
ARM_TT21
TPR_15
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
107392626
NCBI-ProteinID:
XP_015826010
UniProt:
A0A1A8U156
LinkDB
All DBs
Position
sgr02:complement(31043961..31059620)
Genome browser
AA seq
1809 aa
AA seq
DB search
MAAVEEDFPRGGTARKPTGSKAEERTQVENLFQTTEQREKKKRKGGKKDDGKQAKKLKPE
EQKGDLKLNTEAKCVEILHVKHVKEGMLFLGCVKEVADFEVTVSLPSGLQGFLSIKNVCD
SYTKLLTEQLDSELATEEFCSLLHLFHPGMLLRCMVAKLDVTKGGSFSIQLSINPKQVNR
SLASASLKAGIVLSGCVESVEDHGCIIDIGIGGTKAFLPAEAKTPRQKSQEPKVGQYVTA
LVEEVKNGGRVVRLSSDPTVLAQACADTKQDWSLTNLLPGLLVKATIKKVTKHGLFLNFL
SSFTGQVDFLHMESEQASCYSEGQQVQARVLYVDPSTRLVGLSLRSYLVQLGSEINATPP
GGDRVGEVVEECRVTAMHHLSGAVMQLPDKTPAFAHRNHLKEPSEEANENRVLATPEHTC
RVISFSPMEQMYFVSLRKSVIRTPFYRYDDVQAGQVVEGTVSVLLSCGMLVHLSEHVKGL
VPRTHLSDILLKNPEKKYTEGLKVKCRVLSVDAESRQMFLTRKKMLVESSLPLFLSYSDA
RPGRVSHGYIVCIKDFGCVVRFYNNVKGLVPLDELSAEPITRPEEVFYVGQVLKVKVLKC
DPENAKMLLSFKAVVEGETEDAAAPQVDCEIGKRLEAKVVKKLLNGLEVTILPDDIPAIL
PTMHLSDHMSNCPLLWESLQEGDIISNLVCFNKSKKSLTLTKKPTVRWSLEEGAVARDFS
DITVGMQLVGWIKNLMSYGAFVEFPYGLVGLAPKSAMSEKFIKDTMTTFQPGQTVFAKVT
NLDEEKRRFLVTLMMSEVLTPGGDAQTRLINGLQERRAVNEMFALRGGRELRQQLLALSV
GQKLKLTVDSVTESGATFTSDELKDATLLATKHHTTGVELTPGQKVVSVVLHVDILTCCV
HISVLPKLVGKKKSLAEESRYTATVQHIDGDFAVVSLGDTAQLAVIHTSSHLNDIVSLNS
GTMKVGATLAVEVIESSCEALQGLPLVSGLCGAPKRERTTSETQAGSGGHCYGEILQGTV
RSVKPTRIQLVLEDGSKASVHVSEVMEPAAVRLGSFPTSSIKVGSSVTGRVIGGQEVSSQ
RFLPFSHPRFTYRIPELTLIPSKLEDGADFKSVSAQEKLKSYKVGEEITGFVSKFHPDRK
CLDITTYLCVTGTVELLAMITDPADASRPGRRFKLGQAVRVKVVEASVKPHRLVLSLTGF
HKLEKGLVTLGMVLDVQERDGLRVRLPFGGLGNVSVTDLSDTYEPRPLEAFSKGQLVRCF
LLDLKNKTWQLSLRPSRLSPQQAKRARDPEVSSLDQLKEGQIIRGYLKSMTEQGVFIRLS
GSITGRAQLQQATKYFVRSHKILCDKVPVNTLLTTKILSINRDEELVDLSLLSKNTGQPD
ILPGSLGLPLRRVQNDKKRRLPESAQKHTASQIQTKKKKTTTDGEDSGVEVYFREEEDED
KPADASSGSAGPSRLQVAAGFSWDVRLSSLKPAAAAKEEDPSDGEGQEGNSKPQKKSRHE
LEQEKKAAEKALVQTEAKLMDPNLRPEDAATFERLLLASPNSSLLWLQYMAHHLQGTQIE
QARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEDSLKKVFERAVQFCEPMPVYQQ
LADIYANSNKVQEAEGLYKTMVKRFRQNKAVWLSYGSFLLQQGQGDAAAGLLQRALKSLP
PKDSVDVIAKFAQLEFRYGDAEKGHHMLDKVLTSYPKRTDIWSVFLDLTMKHGSQEEVRS
LFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSVQAVKEKAMEFVESEGRNAAATTPRG
APDGRGRVK
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagtggaggaggactttccccggggagggacggcgaggaagcccactgggagt
aaagcggaggagcgaacgcaagtggaaaatctgtttcagacaactgaacaaagagaaaaa
aagaaaagaaaaggaggaaagaaagatgatggaaaacaagccaagaaactaaaacctgag
gagcagaagggagacctcaagctgaacacagaagccaagtgtgtggaaatcctgcatgtc
aagcacgtgaaagagggcatgctgtttctgggctgtgtgaaggaggtggcagactttgag
gtgaccgtcagcttaccttcaggccttcagggcttcctcagcatcaagaacgtctgtgac
tcgtacaccaagctgttgacggagcagctggactcggagctggccacagaggagttctgc
tctcttctgcaccttttccaccctggtatgttgctccgatgcatggttgctaagttagac
gtaaccaaaggaggatctttcagcatccagttgtcgatcaatccgaagcaggtcaacagg
agcctcgcgtcggcgtctctgaaagctggaattgtcctgagtggttgtgtggagagcgtg
gaggatcatggctgcattattgacattgggatcggcggaaccaaagccttcctgcctgct
gaagccaaaacgcccagacaaaaatctcaagagcctaaagtgggtcagtacgtgacggct
ctagtagaggaggtaaagaacggcgggcgtgtggtccgcctgtcctcagacccgaccgtc
ctggcccaggcctgtgctgacaccaagcaggactggagcctcaccaaccttctgccgggc
ctgctggtcaaggccaccatcaaaaaggtgaccaaacacgggctgttcctgaacttcctg
tcctcgttcaccggtcaggtggactttcttcacatggagtctgagcaggcgtcctgttac
agtgaggggcagcaggtgcaagcgcgcgtgctgtacgtggatccgtccacccgtctcgtt
ggactgagccttcgcagctacctcgtccagctagggtctgagatcaacgcgactccgccc
ggcggggaccgggtcggcgaggtggtagaagagtgcagggtgaccgccatgcaccacctg
tcaggagccgtgatgcagcttccggacaaaacgccagcgttcgctcataggaaccacctg
aaggagccgagcgaagaagccaatgagaacagagtgttagcgacgcctgagcacacctgt
cgggtcataagcttcagccccatggagcagatgtactttgtgtccttacggaagagtgtg
atcaggacgcccttttaccgatacgatgatgtccaggctggtcaagttgtcgagggaacg
gtgtccgtccttctcagctgtgggatgctggtgcatctgtcagaacacgtcaaaggtctg
gtgccgcggacgcacctctccgacatcctcctcaagaatccagagaagaagtacacagag
gggctgaaggtgaaatgtcgggttctgtctgtagatgcagaaagccgtcagatgttcttg
accaggaagaagatgctggtggagagctccctgcctctgttcctcagctacagcgacgcc
cgcccgggccgcgtgtcccacggctacatcgtgtgcatcaaagactttggctgcgtcgtt
cgcttctacaacaacgtgaagggtttggttccgcttgacgagctcagtgccgagcccatc
accaggcccgaggaggtcttctatgtcgggcaggtcttaaaggttaaagttcttaagtgc
gacccggagaacgccaagatgctgctgtcgtttaaggcggtggtggagggggagacggag
gacgctgccgcgcctcaggtggactgtgagatcgggaagaggctggaggccaaggtggtg
aaaaagctgctcaacggtctggaggtcaccatcctcccggacgacatccctgccatactc
cccacaatgcacctctctgatcacatgtccaactgtcctctgctgtgggagagcctgcag
gagggagacatcatttcaaacctggtctgcttcaacaagagcaagaagagtctcacactc
accaagaaaccaacggtgaggtggtcgctggaggaaggagccgtggccagagacttctct
gacatcacagttgggatgcagctggtgggctggatcaagaacctcatgtcctacggcgcg
tttgtggagttcccctatggccttgttggtctcgctcccaaatcggccatgtcagaaaag
ttcatcaaggacaccatgaccaccttccagccgggccagacggtcttcgccaaagtgacc
aacctggatgaggagaagcggaggttcctggtcacgctgatgatgtcagaagtcctcacg
ccaggaggagacgcccagaccagactcatcaacggtctgcaggagaggcgagccgtcaat
gaaatgttcgccctcagaggtggccgtgagcttcggcagcagctgctcgctctgtctgtc
ggtcagaagctgaagctgacggttgactctgtcacggaaagcggcgccacgttcacgtct
gacgagttaaaggacgccactctcctcgctaccaagcatcacacgacgggtgttgagctg
accccaggacagaaggtcgtctcagtcgtccttcatgttgacatcctgacttgctgtgtc
cacatttctgtccttcccaagctggtggggaagaagaagtctttggcggaggaatcgcgc
tacacggctacggtgcagcacatcgatggagactttgccgtcgtgtctctgggcgacacg
gcccagctggctgtgatccacaccagcagccacctgaatgacatcgtctcgttgaactct
ggcacgatgaaagtcggcgccacgttggctgttgaagtgatagaatccagttgcgaagcg
ctacaagggctccccctggtgtcggggctgtgcggcgcacccaagcgagagcgcaccacc
tcagagacccaggcgggctctgggggtcactgctacggcgaaatcctgcagggcacggtt
cggtccgtgaagccgacccgcattcagctggtgctggaggacgggagcaaagccagcgtg
cacgtgtctgaggtgatggagcccgccgccgtgcgtctggggtcgttccccacgtcctcc
atcaaagtaggcagcagcgtcaccggcagggtgatcggaggtcaagaggtctccagtcaa
agatttctgcctttttctcatcccagatttacctacaggattcctgagctcacactcatt
cccagcaaactggaagacggcgccgatttcaaatccgtttcagctcaagaaaaactcaag
agctataaagtcggggaagaaatcacaggttttgtgtcaaagtttcatccagacaggaag
tgtttggacatcaccacctacctgtgtgtcaccgggacggtcgagctgctcgccatgatc
acggaccccgcggatgcctctcgcccagggagacggttcaaactgggccaggcggttcgt
gttaaagtggtcgaggcgagcgtcaagccccatcgcttggtgctctcactcacaggtttc
cacaaactggagaaaggcctcgtcactcttgggatggtgctcgacgttcaggaacgagat
ggtctccgtgtcaggcttcctttcggcggcctcggcaacgtctccgtcaccgacctgagc
gacacctacgagccgcgtcctctagaagcgttcagcaaaggccagctggtcaggtgtttc
ctcttggatttgaaaaacaaaacgtggcagttgtccctccgtccttccaggctgtctccg
cagcaggccaagcgggcgagagacccggaggtctcgtctttagaccagctgaaggaaggc
cagatcatccgaggctacctgaagtccatgacagagcagggggtcttcatcaggttgtca
ggaagcatcacaggaagagcccagctgcagcaggccaccaagtactttgttagaagtcac
aaaatcctctgtgacaaagttcccgtcaacacgctgctcaccaccaaaatcctcagcatc
aacagagacgaggagctggtggacctctcgctgctctccaagaacaccggacaaccagac
atcctcccagggtccctcggtctgccgctgcgacgcgtccaaaacgacaagaagcgccgt
ctgccggagagcgcacagaaacacacagcctctcagatccaaacgaagaagaagaagacg
acgacggatggagaggacagtggagtggaggtgtacttcagagaggaggaggatgaagac
aaacctgctgatgcgagtagcggctcagcgggcccgtccaggctgcaggtggctgcgggg
ttctcctgggatgtgcgtctgagctctctgaaacctgctgcagctgcaaaagaggaggat
cccagcgacggagagggccaagaaggaaactctaagccccagaagaaatcccgccatgag
ctggagcaggagaagaaggcggcagagaaggctctggtgcagacggaagccaagctgatg
gatccaaacctgcggcccgaggacgccgccaccttcgagcggctgctcttggcctcgccc
aacagctcgctgctctggctgcagtacatggctcaccacctgcagggcacgcagatcgag
caggcccgggctgtggccgagagggccctgaaaaccatctccttcagagaggagcaggag
aagctgaacgtgtgggtggccctgctgaacctggagaacatgtacggcacagaagacagc
ctgaagaaggtgtttgagcgcgccgtgcagttctgcgagcccatgcccgtttatcagcag
ctggcggacatctacgccaactccaacaaagtccaggaggcagagggcctctacaagacg
atggtgaagcgtttccgccaaaataaagctgtgtggttgagttacggctccttcctgttg
cagcagggccagggcgatgctgccgctggcctcctgcagagggcgctgaagagccttcct
cccaaagacagtgtggacgtaatcgccaagttcgctcagctggagttccgttacggcgac
gccgaaaagggtcaccacatgcttgacaaagtcctgacgagctacccgaaacgaacggac
atctggtccgttttcctcgacctcaccatgaaacacggatcgcaggaggaagtccggtcc
ctcttcgatcgagtgatccacctcagcgtttctgtgaagaagatcaagttcttcttcaag
cgctacctggagtacgagaagaagcacggcaccccgcagagcgtccaggcggtcaaagag
aaggccatggagttcgtggagagcgaaggcagaaacgctgcggccacgacgccacgcgga
gctccagatggtcggggacgcgtgaaatga
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