Nothobranchius furzeri (turquoise killifish): 107392636
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Entry
107392636 CDS
T05163
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107392636 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107392636 (taf5)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107392636 (taf5)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107392636 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
107392636 (taf5)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107392636 (taf5)
STAGA complex
107392636 (taf5)
TFTC complex
107392636 (taf5)
SAGA complex
107392636 (taf5)
SLIK complex
107392636 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
NBCH_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
PROPPIN
eIF2A
VPS8_N
Motif
Other DBs
NCBI-GeneID:
107392636
NCBI-ProteinID:
XP_015826018
LinkDB
All DBs
Position
sgr02:complement(31061313..31069324)
Genome browser
AA seq
753 aa
AA seq
DB search
MAAVQGGMVDAKDELDIKSEPPSDGFGNSNANDGRLLSSSPGAGTGGTATGNNKPAPGPP
EEQQTLLAVLQFLKKSKLAESAEILRREAGLPEDALDPKGTDASGSGPGLAAGSGQVDGV
DASSLLSRVTVSSSAAAQAPKKAAAGEDQPDVSVVLSAYSQQGDPSLYDAYYSGLKRFIE
SVLDCHRAELSQLFYPLFVHMYLELVYNNNESVAKAFFEKFSGDQECYYEQDLRILSSLT
KKEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMP
RSKSQIDAMSGSLAGEARREANKAKVFYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPK
KDSMGSKSKKQDPNAPLQTRIPLPELKDSDKLDKIMYMKESTKRIRLGSDNLPSICFYTF
LNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLER
IMDEKTASELKILYGHSGPVYGISFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNY
PVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADITCTRFHPNSNYVATGS
SDRTIRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMVGE
LKGHTDTIYSLRFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQ
ELLLGTYMTKSTPVLHLHFTRRNLLLAAGAYNP
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacagggtggtatggtcgacgcaaaagacgaattagacataaaatccgaa
ccgccgagcgatggcttcggaaacagcaatgcaaacgacggaaggctactttcctcgtcc
cccggagccggtaccggcggtaccgcgactggaaacaacaaacctgccccgggaccacct
gaggagcaacagacgctgctggcagttctgcagttcctcaaaaagagcaaactggcggag
tccgctgaaatcttgcgtcgtgaggcgggactgccggaggatgctctggacccgaagggg
acggacgccagcgggtcgggaccggggctcgccgcggggagcgggcaagtagacggcgtg
gacgccagctctctgctcagccgggtgacggtgtcttcctccgccgcagcgcaggcgcca
aagaaggcagcagctggggaggaccagccagatgtgagcgtggtgctgtcagcttacagc
cagcagggagatccttctctgtatgacgcctactacagcggcctcaagaggttcatagag
tccgttttggactgtcaccgcgcggagctgtcccagctcttctacccgctgtttgtccac
atgtacctggagctggtgtacaacaacaatgaaagcgtggccaaggccttctttgaaaag
ttcagtggagaccaggagtgctactacgaacaggacctacgtattctctccagcttgacg
aagaaggagcacatgaaaggcaacgagacgctgctggacttccgcaccagtaagtttgtc
ctacggatctcccgagactcgtaccagctgctcaagagacatttacaggagcggcagaac
aaccagatatggaatattatccaagagcacctgtacatcgacatcttcgatgggatgccg
cgcagcaagagccagatcgatgcaatgtcgggcagcctggcaggagaggccagacgagaa
gccaataaggctaaggttttttacggcctgctgaaggagccagaaattgagctgcccctt
gacgatgaggatgaagaggccgagaacgaggagggtaaacccaagaagaaaaagcccaaa
aaggatagcatgggctccaaaagcaagaagcaggatccaaacgctcctttacaaaccagg
atacctctcccagagctgaaggactctgataagcttgacaagatcatgtacatgaaggag
tccaccaagaggatccgtttggggtccgacaacctcccgtccatctgcttctacactttc
ctcaacgcgtaccagggtctgaccgccgtggacgtcaccgacgactccagcctgatcgca
ggtggttttgctgattccacggttcgggtgtggagcgtcacgccgaagaagctccgcaag
gtcaagtctgcagcagatttgaatctgattgacaaagagtcagacgacgttctggagagg
atcatggacgagaagacggccagcgagttgaagattctttacggacacagcgggccggtg
tacggcatcagcttcagcccagacagaaactaccttttgtcaagttcagaggacggtacc
atccggttgtggagtctccaaactttcacctgtctggtgggctacaaaggccacaattac
ccagtgtgggacactcagttttccccctatggatactattttgtctcggggggacatgat
cgggttgcccggctatgggcgacagatcactaccagccgctgcggatattcgccggtcac
ctggctgacatcacgtgtacgcgtttccatccaaactccaactacgtggccacagggtcg
tccgaccgcaccattcgcctctgggatgtcctcaacggaaactgtgtccgcatcttcact
ggtcataagggtcctattcacgccctggcgttctcccccaacgggaagttcttggcctct
ggagccaccgatgggcgggttcttttgtgggacattggtcatggactgatggtcggtgag
ctcaaaggtcacacagacaccatctactccctcagatttagcagggacggagagatcctc
gcctccggttctatggacaacacggttcgcctgtgggatgccatgaaagcatttgatgat
ttagagactgatgacttcacggcagctacaggacacattcacctacaagacaattcccag
gagcttttgctaggcacctacatgactaaatctacgcctgtcctacacctccacttcacc
aggaggaacctccttctggctgcaggagcctacaatccatga
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integrated database retrieval system
