Nothobranchius furzeri (turquoise killifish): 107393089
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Entry
107393089 CDS
T05163
Name
(RefSeq) polypyrimidine tract-binding protein 1-like isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107393089
03041 Spliceosome [BR:
nfu03041
]
107393089
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
107393089
Spliceosome [BR:
nfu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107393089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107393089
NCBI-ProteinID:
XP_015826725
UniProt:
A0A9D2XIL1
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Position
sgr17:complement(410773..436891)
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AA seq
541 aa
AA seq
DB search
MDGSVHHDITVGTKRGSDELFSNASYIMSSTGQESSNANGNDSKKFKGDIRGPSLPSRVI
HIRKLPNDITETEVISLGLPFGDITNLLLLKAKNQAFLEMNSEEAAQNMVGYYSTMMPVI
RHQPVYVQFSNHKELKTDNSPNQERAQAALRALSSSHVDTPVAAPSTVLRVVVENLLYPV
TLDALCQIFSKFGTVLRIIIFTKNNQFQALLQYSDGSSAQASKLSLDGQNIYNGCCTLRI
SFSKLTSLNVKYNNEKSRDFTRPELPSGESQPAMEHPAMAAAFTPGIISAAPYAGATHAF
PPAFTIQPAVSSPYPGLTVPALPGALASLALPTAARLGFPVIPAGHSVLLISNLNPERVT
PHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQIAMSHLNGQRLHGKPLRITLSK
HTSVQLPREGHEDQGLTKDFSSSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDL
KRLFSSSGAAVKAFKFFQKDHKMALIQMGSVEEAIDCLIQFHNHDLGENHHLRVSFSKSS
I
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggacggcagtgtccaccacgatataacagttggtactaagagaggatctgacgagctt
ttttccaacgcctcgtatatcatgagctccacaggtcaggagtcgtcaaacgccaatggc
aacgacagcaagaagttcaaaggtgacataaggggtcccagcctgccgtcacgggtcatt
cacatccgcaagcttcccaacgacatcaccgagaccgaggtgattagcctcggtctgccg
ttcggagacatcaccaacctgctgctgctcaaagccaaaaaccaggctttcttggagatg
aattcagaagaagctgctcagaacatggtgggctattactccaccatgatgcccgtcatc
agacaccaaccggtctacgttcagttctccaaccacaaggagctaaaaacggacaactcc
cccaaccaggagagggcccaggcggccctgcgggccctcagctcttcccatgtggacacg
ccggtggcagctccgagcacggtgctgagggtggtggtggagaacctgctttacccagtc
accttggatgctctctgccagattttctcaaagttcggcaccgttctcaggatcatcatc
ttcaccaagaacaatcagttccaggctctgctgcagtattcggacggctcgtcggcccag
gcgtccaagctgtctctggacggacagaacatctacaacggctgctgcacgctgaggatc
agcttctccaaactcaccagcctcaatgtcaaatacaacaacgagaagagccgtgacttc
acccgaccagaactgccctctggagagagccagcccgccatggagcacccggccatggcc
gcagccttcactccaggaatcatctctgctgcgccgtacgctggagcaacgcacgccttc
ccgccagctttcaccatccagccagcagtgtcctccccttacccaggcctgacggtcccg
gctctgcccggagcgctggcctccttggctctccccacggccgcccggctgggcttcccc
gtcatcccagcgggacactcggtcctgctgatcagcaacctgaaccccgagagagttacg
ccccactgcctctttattctcttcggtgtttacggagacgtgatgcgagtgaagatcctg
ttcaacaagaaggagaacgctctggttcagatgagtgacagcactcaggctcagatagcc
atgagccacctgaacggccagcggctgcacgggaagcctcttcggatcacgctgtccaaa
cacaccagcgtccagctgccccgcgaaggccacgaggaccagggcctgaccaaagacttc
agcagctccccgctgcaccgcttcaagaagcccggctccaaaaactactccaacatcttc
ccgccttcggccactttgcacctgtccaacatccctccctctgtggttgaagatgatctg
aagagactgttctccagttcaggagctgccgtcaaggccttcaagtttttccagaaggac
cacaagatggctcttatccagatgggttctgtagaggaggccatcgattgtctcatccag
ttccacaaccacgatctgggagagaaccaccacctccgggtctccttctccaagtcctcc
atctga
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