Nothobranchius furzeri (turquoise killifish): 107393230
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Entry
107393230 CDS
T05163
Symbol
htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107393230 (htt)
04131 Membrane trafficking [BR:
nfu04131
]
107393230 (htt)
03029 Mitochondrial biogenesis [BR:
nfu03029
]
107393230 (htt)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107393230 (htt)
Membrane trafficking [BR:
nfu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
107393230 (htt)
Mitochondrial biogenesis [BR:
nfu03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
107393230 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_2
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
107393230
NCBI-ProteinID:
XP_015826946
UniProt:
A0A1A8B1W8
LinkDB
All DBs
Position
sgr02:complement(29088016..29151286)
Genome browser
AA seq
3140 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDGESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEEMVQETLAAAVPKI
MSALGHFANDGEVKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRNSYFYTWLLNVL
LGLLVPVDDERLSHLILGVLLTLRYLMPLLQHQVNTSSLKGSFGVMRKEADVQPTPEQLL
QVYELTLHYTQHWDHNVVAAALELLQQMFRTPPPELLHMLITAGSIPHATVFRQDTESRA
RSGSILELIAGGGSSCSPLVLRKQRAKMLSGEEDGLEDDAERTEATAGAFTDGSSSAQVD
IITEQPRSSQHALQPGDSVDLSASSEQGGGGGTSASNTPDSPNEEEMLSGSSSGANVTSE
TADYTTPENATPEGGPLGEGGALLGTNDRSLPPSDSSQTTTEGPDSAVTPSDVAELVLDG
SESQYSGMQIGTLQDEEDEGAPSSSQEEPSEPFLQSALALSKPHLFEGRGHNRQGSDSSV
DRFTPKDEPAEPEPDNKPSRIKGLIGHYTDQQAEPLVHCVRLLAASFLLSGQKNGLIPDK
EVRVSVKALAVSCVGAAAALHPEAFFNPLYLEPLDGVPVEERQYVSDVLCLITHGDPQIR
GATAILCGAIIQAALTKTRYNIHTWLASVQRATGNPLSLVDLVPLLQKTLKDDSSVTCKM
ACSAVRHCIMTLCSSTLSELGLQLVIDLFALWDSSYWLVRTELLETLAELDFRLVGFLER
KTETLHRGAHHYTKWLLLQDRVLNDVVIRLLGDDDPRVRHVAASAVSRLVPRLFFDCDQG
QVDPVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSKTVSDVTLENNLSRV
VTAVSHAFTSSTSRALTFGCCEALCLLASAFPVGTWSTGWHCGYVSASSFSSRSSLSRSR
GRSLSLSQTSSAPASSAATSSAPDAERRTLTVGMANMVLSLLSSAWFPLDLSAHQDALLL
CGNLLSAVAPRCLRNPWVGEEEGSSGNASGGPNKMEEPWPALSERSLVVMVEQLFSHLLK
VLNICAHVLEDTPPGPAAKAALPSLSNTPSLSPIRRKGKEKEAAEPSTTPLSPKKSSEVN
AGRLTDGSGSAAVNKSTTLGSFYHLPPYLKLYDVLKATHANYKVTLDLHSSQEKFGGLLH
AALDVLSQLLELATLHDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNLASQC
EGVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEPEQDAS
GWFDVMQKASNQLRSNIANATRLRGDKNTIHNHIRLFEPLVIKALKQYTTSTSVALQRQV
LDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAVIPSIFFFLVLLSYER
YHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVYDLFVLRGSNKADAGKELETQK
EVVVSMLLRLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMISKQQMHLDSP
EALGVLNTLFETVAPSSLRPVDMLLKSMFTVPATMASVATVQLWVSGILAVLRVLVSQST
EDIVLSRVHELSLSPHLLSCIAIRRLHQPKPSPNDPPATDPVSNQEANGEAQKVPPEETF
ARFLLQLVGVLLEDISSRRVKVDIGEQQHTFYCQQLGTLLMCLIHVFKSGMFRRITAAAG
RLLKGEGSGGQTSAEAGLFYQLEGLNSMVQSLVTTHPSLVLLWCQVLLIINYTNYSWWAE
VNQTPRGHSLSSTKLLSPHSSGEEEEENPESQLAMVNREIVRRGALILFCDYVCQNLHDS
EHLTWLIVNHVRDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLATPTMLKKT
LQCLEGIHLSQSGSLLMLYVDKLLRTPFRVLARMVDTLACRRVEMLLAETLQNSVAQLPV
EELERIQEYLQTSGLAQRHQRFYSLLDRFRATVTDTASPAPPVTPHPLDGEPPPAPEKIV
ADKEWYVALVKSQCCLRGDVCLLETTELLTKLPPPDLLSTMSCKDFNPSLLCPSLSVGLQ
RLTRGQGSLLLDTALQVTLEQLAEVTGSLPVPHQPFLPPPEPQPYWNHLGGVYDDPSFYP
KVLSLCRALSQYLLGVGQLPPSLQIPPDKEQLITTFTCTAAEVVAWQLLQDRLPLSVDLQ
WALSCLCLALQQPCVWNKLSTPEYTTYTCSLIYCLHHIITAVAVSPGNQLLRPEKKQKHG
DAEGDQVDLGHASNECEWRACEIMAELVEGMQSILSLGHPRNSSFPAFLTPTLGNIVISL
SRLPLVNSYTRVPPLVWKLGWSPQPGGEFGTALPEIPVDFLQEKDVFREFLYRINTLGWS
SRTQFEETWATLLGVLVTQPITMEQQEETHQEEDLERTQLNVLAVQAITSLVLSAMTLPA
AGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVHTHHPYHAWD
PVPSLSAASTAGMLISHEKLLLQINTERELGNMDYKLGQVSIHSVWLGNNITPLREEEWG
EDEEDEADTPAPASPPLSPINSRKHRAGVDIHSCSQFLLELYSQWLIPGPPSNKRTPTIL
ISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPAICKAAAVLGMD
KAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDETAKQLVPTVSEYLLSNLKA
IAHCVNLHNQQHVLVMCAVAFYLMENYPLDVGAEFIAGVIQLCGVMVSASEDSTPSIVYH
CVLRGLERLLLSEQLSRVDGEALVKLGVDRVNMPSPHRAMAALGLMLTCMYTGKEKAHPD
PQAPDSESVIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFL
SNQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVS
ASTSQWISALLPHVISRMGSSEIVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVASP
GSPYHQLLGCLQSIHQDASL
NT seq
9423 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactcatgaaggcctttgagtctctgaagtcgtttcagcagcag
cagggaccgccgactgcagaggagctcgttcagagacaaaaaaaggagcaagcaacgaca
aagaaggacagggtgacccactgcctgaccatatgtgaaaacatcgtggctcagtcactg
agaacatctccagagttccagaagctgctcggcatcgccatggagatgttccttctctgc
agcgacgacggtgaatcagatgtgcggatggtagctgacgagtgcctgaacaaaatcatc
aaagctctgatggactcaaacctgcccagactgcagctggagctgtacaaagaaatcaaa
aagaacggtgcctctcggagtctaagagcagctttgtggaggtttgctgagctcgctcat
ctcatccgaccacagaaatgcagaccgtacctggtcaacctgctcccatgcctcaccaga
atcaccaaacggcaggaggaaatggttcaggagactctggctgcagcggtgcccaagatc
atgtcagccttgggacatttcgccaacgacggcgaagtcaaggtgctgctgaagtcattt
gttgccaacctgaagtccagctcccccaccatccggcgtacggcagccagctcggccgtc
agcgtgtgccagcactcgagacgcaacagctacttctacacctggctccttaacgtgctg
ctgggcctgctggttccggtagacgacgagcgcctgagccacctgattctgggggtgctg
ctaactctccgctacctgatgcctctgctgcagcatcaagtcaacacctccagcctcaaa
ggcagctttggggtcatgaggaaggaggccgatgtgcagccaacacctgaacagctgctg
caggtgtacgagctgaccctgcactacacgcagcactgggaccacaacgtggtcgccgct
gccctggagctgctgcagcagatgttcaggacccccccaccagagcttctgcacatgctc
atcacagccggcagcatcccacacgccaccgtgtttcgccaggacacggagagccgcgct
cgctcgggaagcatcctggagctcatcgcggggggagggtcttcctgcagtccgctcgtt
ctcaggaaacagagagctaaaatgctttctggggaggaggacgggttggaggacgacgct
gagagaactgaggccaccgctggagcttttacagacggctcctcttctgcccaggtggac
atcatcaccgagcagccgcgctcctcccagcatgctctgcagccgggcgactcggtggac
ctcagcgcctcctcagagcagggtggtggaggagggacatctgcttcgaacacccccgac
tcgcccaacgaggaggagatgctgagtggaagctccagcggggccaacgtgacctcagag
acggccgactataccactccagaaaacgccaccccggagggagggcctctaggagagggc
ggagcgttgctcgggaccaacgatcgctcccttccacccagtgattcctctcagaccacc
acagaaggaccagactcagcggtgactccttcagacgtagcagaactggttctcgatggc
agtgagagtcagtactccgggatgcagataggaacactccaggatgaagaagacgaagga
gcaccatcttcctcccaagaagaaccctcagaaccttttttgcagtcagcactcgctctg
agcaagcctcatctgttcgaaggccgaggtcacaatcgacagggttccgacagcagcgtg
gaccgcttcacaccaaaggatgaacccgcagaacccgagcctgataacaagccgtcgcgg
ataaaaggtctgattggacactacacggatcagcaggcggagccactggtgcactgcgtt
cgacttcttgctgcttcttttcttctgtcagggcaaaagaatggtttgatccctgacaaa
gaggtgcgagtgagtgtgaaggcgttggctgtcagctgtgtcggcgcagcagcagcgctg
catcccgaagccttctttaaccccctctacctggagccgctggatggcgttccagtagaa
gagcgacagtacgtcagcgacgttctctgcctcatcacccacggggacccccagatcaga
ggagccacagccatcctctgcggagccatcatacaagctgcgctaaccaaaacacgctac
aacattcacacctggctggccagtgtgcagcgtgcaacaggtaaccctttgtccctggtg
gacttggtgcctttgctccagaaaactcttaaagatgattcctctgtcacctgtaagatg
gcttgttctgcagtcaggcactgcatcatgaccctctgcagcagcaccctgagtgaactc
ggcctgcagctggtgatcgacctctttgctctgtgggactcttcctactggctcgttcgc
accgagctcctggaaacgttggctgagttagacttcagattagtcggtttcctggagagg
aaaacagaaactttacacagaggagctcatcactacactaagtggctgctgctgcaggac
agagttctgaatgacgtggtcatacgtctgctgggagatgacgacccaagagtccggcac
gtggcggcgtctgctgtcagcagactagttccaagactgttcttcgactgtgaccaaggc
caagtggacccagtggtggcgattgctcgggaccagagttcggtctacctacagctgctg
atgcacgagactcaacccccgtctcagttcacggtcagcaccatcacaaggacgtaccga
ggctacaacctttctaaaaccgtgtctgacgtcactttggaaaacaacttgtcccgagtt
gtaacggccgtctcgcacgcgttcacgtcctccacctctagagcactgacctttggctgc
tgtgaggctctgtgcctcctggcatcggcttttccggtcggcacctggagcacaggctgg
cactgtggctacgttagcgctagcagcttctcgtctcgttccagtctgagccgcagcaga
ggcaggtccctcagtttgtcccagacgagcagcgctccagcgtcttcagccgccacttca
tcagctccagacgctgagcggaggactctgaccgtaggaatggccaacatggtgctgtcc
cttctgtcttctgcctggttccctctggatctctctgcacatcaagatgcacttttgctc
tgcggcaacctgctgtctgctgtggctcctcgatgcttgcgcaacccctgggtcggagag
gaggaaggcagtagtgggaacgccagtgggggcccaaataaaatggaggaaccgtggccg
gcactgtcagagcgctccctggtggtcatggtggagcagctgttctctcatctcctgaag
gtgctcaacatctgtgctcacgtgttggaagacacgccgccaggaccagccgctaaagcg
gctcttccctccctgagcaacacgccctccctcagtccgatcaggagaaaaggcaaggag
aaggaggctgcagagcccagcacgactcctctgagccccaaaaagagcagcgaggtcaac
gcgggcaggctaacagacggctcggggtccgcagcagtgaacaaatccaccaccctcggc
agcttctaccacctgcctccctacctcaagctctacgatgtcctcaaagccacccacgcc
aactacaaggtgacgttggatctccacagcagccaggagaagtttggaggactcctgcat
gccgctctggacgttctgtctcagctgctagagctggccacactacacgacatcggaaag
tgtgtggaggagattctgggctacctgaagtcctgcttttccagggaaccaaccatggct
accgtttgcgtgcagcagttgctgaagacgctgtttgggaccaacttggcctcccagtgt
gaaggagtcctgagcggacccagccgctcccagggaaaagctcttcgcctgggctcgtcc
agcctgcgaccgggcctctaccactactgcttcatggcgccgtacacacacttcacccag
gctctcgctgacgccagtctccgtaacatggtgcaggctgagccggagcaggatgcttct
gggtggttcgatgtgatgcagaaggcctccaatcaactgaggtccaacattgccaacgcc
acgcgtctacgaggagataagaacaccattcacaaccacattcggctgtttgagccgctg
gtgatcaaagctctgaagcagtacaccaccagcacctccgtagccctgcagagacaagtt
ctggaccttctggcccagctggtgcagctcagagtcaactactgcctgctcgactcggat
caggtcttcatagggtttgtcctaaagcagtttgagtacatcgaagtgggacagttcaga
gattccgaagccgtcatccccagcatattcttcttcctggtgctgctgtcgtacgaacgc
taccactccaagcagattatcagcattcccaagatcatccagctgtgtgacggcatcatg
gccagcggcaggaaggcggtcacccacgccatcccggccctgcagcccatcgtttatgac
ctgtttgtgttgaggggctcgaacaaagccgacgcagggaaagagctggaaacgcagaag
gaagtggtggtctccatgctgctccgactggtgcagcaccatcaggtgttggagatgttc
atcctcgtcctgcagcagtgtcacaaagaaaacgaagacaagtggaagaggctgtccagg
cagatcgctgatgtcatactccccatgatttctaagcagcagatgcacctggactctccg
gaggctttaggagttttgaacaccttgtttgagacggtggcgccctcgtctctcagacct
gtagacatgctgctcaagagcatgttcaccgtcccggccaccatggcgtccgtcgctaca
gtccagctgtgggtgtctggtatcctggcggtgcttcgagttttagtctctcagtccact
gaggacattgtcctgtccagggtccacgagctgtccctctccccacatctcctgtcctgc
atcgccatccgccgcctgcatcagccgaagccctcccccaacgacccgcctgctaccgac
ccggtttctaaccaggaggctaatggtgaggctcaaaaggttccgcctgaggaaacgttt
gccaggttcctcctccagctggtcggcgtgctgctggaggacatctccagcaggcgtgtt
aaagtggacatcggtgagcagcagcacaccttctactgccagcagctgggcacgctgctc
atgtgtctcatccacgtcttcaaaagcggaatgtttcgccgcatcaccgctgcagccggc
cgtctcctgaagggcgagggctccggtggacagacgagtgccgaagctggtctcttctat
cagttagaaggactcaacagcatggtgcagtccctcgtcaccacccacccgtctctggtg
ctgctgtggtgtcaggttctcctcataatcaactacaccaactactcgtggtgggctgaa
gttaaccagacacccaggggacacagcctgtcctccacaaagctgctgagtcctcactcc
tcaggggaagaggaagaagaaaacccagagtcccagttagccatggtcaaccgggagatc
gtacgcagaggagccttaattctcttctgtgattacgtgtgtcagaacctccacgactcg
gagcatctgacctggctgattgtcaaccacgtccgtgacctcatcagcctttcccacgag
ccccctgtccaggatttcatcagcgctgttcaccgaaactcagccgccagcggcctcttc
atccaggccatccagtcccgctgcgacaacctcgccacgcccaccatgttaaagaagacg
ctgcagtgtctggaaggcatccacctgagtcagtccggatctctgctcatgctctatgtg
gacaagctgctcaggactcccttcagggttctagctcgcatggtcgacacgctggcgtgt
cgccgagtcgagatgctgctggcggagacgctgcagaacagcgtcgcccagcttcctgtg
gaggagctggaaagaatccaggaatatctccagaccagcggtttggcccagaggcatcag
aggttctactccctgctggacaggttcagagccactgtgaccgacaccgctagccccgcc
cctccagttacaccacaccccttagacggggagccaccccccgccccggaaaagatcgtg
gctgacaaggaatggtacgtggcccttgtgaagtcccagtgctgtctccgcggagacgtt
tgtcttttggagacgaccgaacttctgaccaaactacctcctccggacctcctgagcacc
atgagctgcaaggatttcaacccgagcctgttgtgtccgagcctgagcgtgggcttgcag
aggttaacgcggggtcaggggtcactcctgttggacacggccttgcaggtgacccttgag
caactagcagaggtcacggggtcacttcctgttccacaccagcctttcctgccaccgccg
gaaccgcagccttactggaaccatctgggtggcgtgtacgatgatccaagtttttatccc
aaggttctgtcgctctgccgagcgttgtcccagtacctgctgggcgtcggccagctgccg
ccatcgttgcagatcccccccgataaggagcagctcatcaccacgttcacctgcacggct
gctgaggtggtggcgtggcagctgctccaggaccggctgcccctgagtgtggacctgcag
tgggctctgtcgtgcttgtgtctggccctgcagcagccctgcgtctggaacaagctctca
acccccgagtacaccacctacacctgctccctcatctactgcctacaccacattatcact
gctgtggctgtgagtcctggcaaccagctgctgcgtccagagaagaagcagaaacatgga
gatgctgaaggagaccaagtggacctgggccatgccagcaacgagtgcgaatggcgagca
tgtgagatcatggccgagctggtggaagggatgcagagcatcctttctctgggtcacccg
cgaaactcctcgtttcccgcttttctcacaccgacgttgggcaacatcgtcatcagcctg
tcccgcctacctctggtcaacagctacaccagagttcctccactggtctggaagctgggc
tggtccccgcagcctggcggagagtttggcaccgcgctgcccgagatccctgtggacttc
ctgcaggaaaaggatgtcttcagagagtttctgtaccgcatcaacacgctgggctggagc
agcaggactcagtttgaggagacctgggccactctgctgggggtgctggtcacccagccc
atcacgatggagcagcaggaggagacgcatcaggaggaggacttggagcgtacccagcta
aacgtgttagcagtgcaggctatcaccagcctggtgctgagtgccatgaccctgcccgcc
gctggcaaccctgcggtcagctgtctggagcagcagcctcgcaacaagagcctgaaagcg
ctggagacgcggtttgggaggaaactggctgtgattaggggcgaagtggagagagagatt
caggctcttgtgtcaaaaagagacaacgtccacacacatcacccgtaccacgcctgggac
cccgttccctcgctgtccgcagcctccacagcaggtatgctgatcagccacgagaagctg
ctgcttcagatcaacacggagagggagctgggcaacatggactacaagctggggcaggtc
tccatccattctgtgtggctgggcaacaacatcactcccctgagggaggaagagtggggc
gaggatgaagaagacgaagcagacacgccggcgcccgcttcgccacctttatcaccaata
aactccaggaaacaccgagcaggtgtggacattcactcctgctcacagttcctcctggag
ctttacagccagtggctgatcccaggccctcccagcaacaagaggactccgaccatcctc
atcagtgaggtggttcgctcgctgctggccgtgtcggacctgttcactgagaggaaccag
ttcgacatgatgttctccaccctgatggagctccagaagcttcacccaccagaggacgaa
atcctgaaccagtacctggttcctgccatctgcaaggcggcggccgtgttgggcatggac
aaagccatagccgagcctgtgtgccgcctgttggagacgaccctgcgcagcacccacctg
cccagccgcatgggggccttgcacggcgtgctatacgtgctggagtgtgacctgctggat
gaaacggccaagcagctcgttccgacggtctccgagtaccttctgtcgaacctcaaggcc
atcgctcactgtgtgaacctgcacaaccagcaacatgtgctggtgatgtgtgccgtggcc
ttctacctgatggagaactaccctttggacgtcggagccgagtttatagccggagtcata
cagctgtgtggcgtgatggtgtccgccagcgaggactccaccccctccatcgtctaccac
tgcgtgctgcgaggactggagcgcctcctgctgtcggagcagttgtcccgcgtggacgga
gaagcgttggtgaaactcggcgtggaccgtgtcaacatgccgtctccgcaccgcgccatg
gccgctctgggtctcatgctcacctgcatgtacaccggcaaggagaaagcccaccctgac
ccccaagccccagacagcgagtcggtcatcgtcgccatggagagggtttccgtgctcttc
gacaggatcaggaaaggtttacccagcgaggctcgggtcgtgtccaggattctgccccag
ttcctggacgacttcttccctccgcaggacgtcatgaacaaagtcatcggcgagttcctg
tccaatcagcagccgtacccgcagttcatggccactgtggtttacaaggtgttccagacg
ctccacgccacgggccagtcctcaatggtgcgagactgggtgctgctgtccttgtccaac
ttcactcagaggacaccagtggccatggctatgtggagcctctcctgcttctttgtctct
gcgtccacctcccagtggatttctgctctacttccacacgtgatcagccgaatgggctcc
agcgagatcgtggacgtcaacctgttctgcctcgtggccatggacttctaccggcaccag
atcgacgaggagctggaccgcagggcgtttcagtccgtctttgagaccgtggcctcgcca
ggcagcccttatcaccagctgctgggctgcctgcagtcaatccaccaggacgcgtccctc
tga
DBGET
integrated database retrieval system
