Nothobranchius furzeri (turquoise killifish): 107393338
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Entry
107393338 CDS
T05163
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
107393338
NCBI-ProteinID:
XP_015827105
UniProt:
A0A1A8AU10
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Position
sgr17:complement(32579258..32617492)
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AA seq
740 aa
AA seq
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MVAIPLQFFSNLILLLQLCLLHIVYGGAYYGQKQPPQQPIPQYNDGFPQQMGNEMPHLSY
GKEVASLPQYGNEFPQLPLQMGKQMPPTKGKGQIFPRGQKGPPLPLPDGQGFREGPQGIQ
GPPGPIGPPGPQGSPGSPGQGLPGLPGKPGPSGPQGYTGIGKPGMPGLPGKPGGPGLPGP
MGGIGPVGGEGPIGHPGPPGLPGPTGLPGISKPGGQGLPGLPGLLGEPGQKGPPGFPGPV
GPKGEKGIGLPGFPGLKGPGGPPGPPGQAGLPGDGKPGSIGLPGQPGIPGKPGLPGEPGL
AGQPGERGQPGLPGMPGIGKPGNDGFRGQPGLAGGKGEPGPPGLTGPPGLPGYGKAGYPG
PKGHKGHAGLPGSPGPRGDKGQIGLPGIVGPTGLNGIPGAPGPMGPPGDLGFPGLKGDDG
ARGSWGNPGAKGEMGSSGLPGRRGIPGETGQPGPRGLQGPTGPKGEFGSRGLPGTTGATG
LQGSKGDGGEPGDKGQPGPQGIPGLTGPGGPIGPPGLPGLKGEAGLSGIPGFPGKGSPGP
SGETGPQGSPGLSGPPGLPGLPGPPGRPGPPGISATYPDLGQILPHSGPYTGQNYDKLKN
GGEMSGSVLKMPSFTAKLTNPFPLVGSPIIFDKLLHNANQDYNPQSGIFTCSIPGIYYFA
YHVNCKGSNVWVALMKNNEPVMYTYDEYKKGLQDQASGSAVLPLRKGDTVYLQLPSDQAA
GLYAGQYVHSTFSGYLLYSM
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggtggctatccccctccagtttttcagtaacctaatcttactcctccagttatgcttg
ttacacatagtttacggtggagcatattatggacagaaacagccgccacagcagcccata
ccacaatacaacgatgggtttcctcagcaaatggggaatgagatgccccacttgtcttac
ggtaaagaagtggcatcactgccgcagtatggaaatgagtttcctcagctgccattgcaa
atgggaaaacaaatgccaccaactaaaggaaaaggtcaaatcttccctagagggcaaaaa
ggtccacctctgcctcttccagatggacaaggtttcagagaaggaccacaaggaattcag
gggccccctggaccaatagggccaccaggtccacaaggatcccctgggtcaccagggcaa
ggacttccaggtttaccaggaaaaccaggtccctctggtccccaaggctacacgggaata
ggaaaaccaggtatgccaggattgccaggaaaacctggaggccctggattaccaggacca
atgggcggcatcggtccagtggggggtgagggaccaattggacatcctgggcctccaggg
cttccaggtcccactggactccctgggatttccaaaccaggaggtcaaggtcttcctggt
ctaccaggcctattaggagagcctggccaaaaaggcccacctggatttcctggtcctgtg
ggtccaaaaggagaaaaaggcattggtttacctggttttccaggtttaaaaggacctggt
ggaccccctggtccacctggacaagctggacttcctggcgatggtaaacctggctctatt
ggtttacctggacaaccaggaataccagggaaacctggtcttcccggggagcctgggttg
gcaggacaaccaggtgaaagagggcaaccaggactcccaggcatgccaggaattgggaaa
ccaggtaatgatggttttagaggtcaaccagggcttgctggaggaaaaggggaaccaggg
cctcccggtttaacggggcctccaggtttgccaggttatggcaaagcaggatatccaggt
cctaaaggtcacaagggacatgctggtcttccgggatcaccaggtccaagaggagataaa
ggtcaaataggtcttccagggattgttggtccaactggtcttaatggaatacctggtgca
ccaggcccaatggggccacctggtgatcttggcttcccaggactgaagggagacgatggt
gctagaggatcatggggaaatcctggagcaaaaggtgaaatggggtcttcaggtcttcca
ggacggcgtggtattccaggagagactgggcaacctggaccaagaggtttacaaggtcct
actggccctaaaggagaatttggtagtagaggtttacctggcactactggtgctacagga
ttacaaggatcaaaaggagatggtggagagcctggagacaaaggccagccaggaccacag
ggtattcctgggcttacaggaccagggggacccattggacctcctggtcttccagggcta
aaaggcgaagcaggtctgtcaggtatcccaggttttccaggcaagggaagtcctggaccc
tctggtgaaactggccctcagggtagccctggtctcagtggccccccaggacttccggga
ctaccaggaccaccaggacgccctggccctccaggaatatctgctacatatcctgaccta
ggacagatcctccctcacagtggaccttacactggacaaaactatgataaattgaagaat
ggaggcgagatgagtggaagtgttctgaagatgccttcattcacagcaaagctcactaat
cctttccctttggttggttctcccatcatatttgacaaactgctgcacaatgctaatcag
gactacaatcctcaaagtggtattttcacttgtagcatcccaggaatctactactttgct
taccatgttaactgcaaaggaagtaatgtttgggtggcactgatgaaaaacaatgagcct
gttatgtacacatatgatgagtacaaaaaggggttgcaggatcaggcttcggggagtgct
gtactcccgttacgaaaaggagacactgtttacctacagcttccttcagatcaggcagct
ggactttatgccggtcagtatgtccactccaccttctctggatacttgttgtactccatg
tga
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