Nothobranchius furzeri (turquoise killifish): 107393441
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Entry
107393441 CDS
T05163
Symbol
smarce1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107393441 (smarce1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107393441 (smarce1)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107393441 (smarce1)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107393441 (smarce1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107393441 (smarce1)
PBAF complex
107393441 (smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
GCN5L1
HMG_WDHD1
Pcf11_helical
Motif
Other DBs
NCBI-GeneID:
107393441
NCBI-ProteinID:
XP_015827273
UniProt:
A0A1A8AP69
LinkDB
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Position
sgr02:28252275..28274258
Genome browser
AA seq
427 aa
AA seq
DB search
MSKRPSYAPPPPPAPTTQMPNTPGFVGYNPYSHLAYNNYRLGGTQSSNSRATNSSGINIP
KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYLNDYE
AEKIEYNESMKAYHNSPAYLAYVNAKSRAEAALEEESRQRQSRLDKGEPYMSIQPAEDPD
DFDDGFSIKHSAAARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRK
LEAELLQIEDRHQDKKRKFIEATESFNSELKRLCCMKVEVDMEKISAEIAAAEEAARKRM
AEREKDSGDRGPREAPSCVLAEEEKHVCVTHGKSQQSSHTRDSSNKEGEDAESASADTPG
KQKSSEELEAPPGSEEGASEDKESVPEGAMEEGTSDSNTGSETASAQTEDPQTSDPSEGP
SRARAAH
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagagaccatcctatgctcctccgcctccacctgccccaacaactcaaatgccc
aacacccccgggtttgtggggtacaacccgtacagccacctggcctacaacaactacagg
ctcggggggacccaaagcagcaacagtcgggcaacgaattcctctggaataaacatccca
aagcctcccaaaccacccgacaagccgctgatgccatacatgagatacagtcgaaaggtt
tgggatcaagtaaaagcctccaatcctgatctgaagctatgggaaattgggaagataatc
ggtggcatgtggagggacctcactgatgaggagaaacaggattatttgaatgactacgaa
gcagagaagattgagtataatgagagcatgaaggcctatcacaactcgccagcctacctg
gcctatgtcaacgctaaaagccgggccgaggcagctctggaggaggagagccgccagagg
cagtccagactggacaagggcgagccttacatgagcatccagccggccgaggatccagat
gattttgacgacggcttctccatcaagcactcggccgccgcccgtttccaacgcaaccac
cgtctgatcagcgagatcctgagcgagagcgtggtcccagatgtgcggtccgtcgtcacc
actgctcgcatgcaggtcctcaagcgccaagtccagtctttgatggtgcatcagagaaaa
ttggaggcagagttgcttcagattgaagaccgccaccaggacaagaaaaggaaattcatt
gaagccacagagtcattcaacagtgagctcaaaaggctgtgctgcatgaaggtggaggtg
gacatggagaagatttctgcagagatagctgcagcagaggaggctgcacgcaaacggatg
gccgagcgcgagaaggactctggtgaccgaggcccgagagaagcgccctcctgtgttctg
gcagaggaggagaagcacgtttgtgtgacgcacggcaagtcccagcagagctctcacacc
agggacagcagcaacaaggagggcgaggacgcagagtcggccagcgccgacacaccagga
aaacagaaatcgtccgaggagctggaggctcctcctggcagcgaggagggggcgtcggag
gacaaagagagcgtcccggagggagccatggaagagggaaccagcgacagcaacacgggc
tcggagaccgcctcggctcagacggaagatccccaaaccagcgatccgtccgaggggccc
agcagggccagggcagcccactga
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