Nothobranchius furzeri (turquoise killifish): 107394090
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Entry
107394090 CDS
T05163
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
107394090 (ptch1)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
107394090
NCBI-ProteinID:
XP_015828340
UniProt:
A0A1A8UAN7
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All DBs
Position
sgr18:complement(28922330..28998425)
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AA seq
1542 aa
AA seq
DB search
MASAVNAPSEQENRDPERPRITRRSRGDYTRSTPLDLEYLQRPSYCDAGFALEQISEGKA
TGRKAPLWLRAKFQRLLFRLGCYIQRNCGKFLVVGLMIFGAFAVGLKAANLETDVEKLWV
EVGGRVNQELKYTRQKMGEEAMFNPQLMIQTPREEGASILTVEAILQHLESALRASRVHV
YLYNRKWELEHLCYKSGEFVTETHFMNQMIENLNPCLIITPLDCFWEGAKLHSGMAYLPG
EGFRQWADFDPKKFLNKLNLTSFLLEDFEDMLEKTGVGHGYMDRPCLNPADPDCPLTAPN
KNSTKPLNVARTLSGGCHGLSKKYMHWQEELIIGGTTKNGSGPLLSAQALQTMFQLMTPK
QMFEHFRGYDEVSHINWNEEKAAAILEAWQRRYSEAVLQSVAENSSQIVLPFTTTTLEDI
LKSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVMLVTLSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGTSVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREERRFDI
FCCFYSPCANRVVQIEPQAYLDGADAGRYSPPPSYRTPPPSYHTPPPSYSSPPPSYSSHS
FAQQTQITMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPINPAPTRSNRSSDYYNNNNS
SRGNSGSRGSASFSHQYPASTLTPPTSSSVPQGDTVSSTGQSPENSSSTRDLLSNVGEAS
LGLHCLEPACSRWTLASFAEKHYAPFLLQPTTKVVVIMLFLCLLGVSLYGTTQVRDGLEL
TDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRADYAQIQPLLHQLHHRFHSIRYVLKEED
GQLPRMWLHYFRDWLQGLQQAFDTDWEAGRITTNNYRNGSDEGILAYKLLVQTGRREKPI
NFNQLTRQRLVDADGIINPGAFYIYLTAWVSNDPVAYAASQANIHPHPPEWIHDRTDSMP
ETRLNIPAAEPIEYTQFPFYLNGLRETPQFVEAIESVREICNNYSQQGLPSYPNGYPFLF
WEQYVSLRHWLLLSISVVLACTFLVCALFLLNPWTAGIIVLVLSLMTVELFGFMGLMGIK
LSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRHKRAVLALEHMFAPVLDGAFSTLLGV
LMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSPADGCSRLPSPS
PEAPSRVVRFSVRPPQTTGATTTTTTSGAVTDSSDSEYSSNTTASGISQAMQDYNLHSHR
AEEQQYHLQTSRGRAARTENERREGSGHRRLPPRQHNPPAYTMSSSFPSQRCDSGTTQHN
SSRDRRSQRRRQAPPPARPRTDAFGTATEAGGYHGPPGHREHSAGHQGCSSPNPQPHHHL
PHQHPGTASFCQPITTVTASASVTVAVHPAPFSAQSPASSYPEYTAADSYGPSGPEEPEA
TFQDPHVPIYTHTEAREVKMEAMELQDLESEAAESNRGGQGS
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgttaatgcgccctccgaacaggaaaacagagaccccgaacggccgagg
ataacgcggaggagcaggggggactatacccgcagcacaccgctggatttggagtatttg
cagcggccgagttactgcgatgcgggctttgctctggagcaaatctcagaggggaaggcg
actgggaggaaagcgcctctgtggctcagagcgaagttccagagacttttattcaggctg
ggctgttacatacagaggaactgtggaaagtttttggttgtaggcctcatgatttttgga
gctttcgccgtgggcttaaaggcagctaatttggaaacagacgtggagaaactctgggtg
gaagttggcggacgcgtaaatcaggaactgaagtacaccaggcagaagatgggcgaggaa
gccatgttcaaccctcagctgatgattcagacgccgcgagaggagggggccagcattcta
acggtggaggccatcctgcagcacctggagtctgctctccgagccagcagagttcatgtt
tacctttataacagaaaatgggaattggaacatttatgctacaaatcaggagaattcgtg
acagaaactcatttcatgaatcagatgatagaaaatcttaatccctgcctcatcatcacc
cctttggactgtttctgggaaggagccaagcttcactctggaatggcttatcttccaggt
gagggcttcaggcagtgggccgattttgaccccaagaagttccttaacaagctcaacctg
actagctttctcctggaagactttgaggacatgttggagaagacgggcgttggacacggc
tacatggatagaccctgtctgaaccccgctgaccctgactgccctctcaccgcacccaac
aagaactcaaccaagcctttaaatgtggcgcggactctgagcggaggctgccacggtctg
tccaagaagtacatgcactggcaggaggagctgatcataggtgggaccacaaagaacggc
agtgggcccctgctcagtgcccaggccttacagaccatgttccagctgatgactcccaag
cagatgtttgagcactttcggggctacgacgaagtttcccacatcaactggaacgaagaa
aaggctgcagccatcctggaagcctggcagaggagatactctgaggcagtgctgcagagt
gtggcagaaaattcatcccagatagtcctaccttttaccaccaccaccctggaggacatt
ctcaagtctttttctgacatcagtgttattcgtgtggccagcggctacctgctcatgctg
gcttacgcgtgtctgacaatgctacggtgggactgtgctaagtcccaaggtgccgtgggc
ctggcgggggtcatgctggtgaccttgtctgtggcagctggcctaggtctctgttccctt
ctgggcatctccttcaatgctgccacaacacaggttcttcccttcttagccttgggagtc
ggagtggatgacgtcttccttcttgctcatgccttcagtgaaaccggacagaacaagagg
atcccattcgaggatcgtacgggggagtgtttgaagaggacagggaccagtgtggcgctc
acctccatcagtaacgtcacagcgttcttcatggccgccctcatccccatcccagcgctc
cgtgccttctctctacaggcggcggtggtggtggtctttaacttcgccatggtgctgctc
atctttcccgccatcctcagcatggacctttaccgacgcgaggagaggcgtttcgatatt
ttctgctgcttctacagcccttgtgccaatcgtgtggttcagatcgagcctcaggcgtac
ttggatggggcagatgcggggcgctacagccctcctccatcatatcgcacccctcccccc
tcatatcacacgcctcccccaagctacagcagtcctccgccatcctacagcagccacagc
tttgcccagcagacccagatcaccatgcagtccaccgtgcagctcaggacggagtacgac
ccccggactcaagccttctacacaacagccgagcccaggtcccagatctccgtgcagccg
attaacccggctccaacgaggagcaaccgcagcagtgactattacaacaacaacaacagc
agcagaggcaacagcggatctagaggctccgcctctttctctcaccaatatcctgcatct
acattgaccccgcccacttccagttccgttcctcagggtgacacggtctcgtctactggt
cagagtccagagaacagcagctccacccgggacctgctgtccaacgtcggagaggcctct
ctgggcctgcactgcctcgagcccgcctgctcccgctggacgctggcctctttcgctgag
aagcactatgcgccgttccttctgcagcccaccaccaaggtggttgtgattatgctattc
ctctgcctgctgggagtcagcctgtacgggaccacccaagttcgggatggcctggagttg
acggacatagtgcccagagagaccagcgagtacgacttcatcggcgcccagttcaagttc
ttctccttctacaacatgtatgtagtgacccaacgggccgactacgcccagatccagcct
ttgctgcaccagcttcaccacaggttccacagcatccgctacgtgctgaaggaagaggac
ggtcagctgccccgcatgtggctccactacttcagggactggctgcaaggactccagcag
gcgttcgacacagactgggaggccggccgcatcaccaccaacaactacaggaatggatca
gatgagggcatcctggcatacaagctcttggtccagacgggacgcagggaaaaacccatc
aacttcaaccaattgactcgtcagagactcgtggatgcagatgggatcatcaaccctgga
gctttttacatctacctaaccgcctgggtcagcaatgatcctgtggcgtatgctgcctca
caggccaacatccatccacaccctcctgagtggatccacgaccgaaccgactccatgccc
gagacacgtctcaacattcccgctgcagagcccatcgaatacacacagttccccttctac
ctcaacgggctccgggagacgccacagttcgtggaggccatcgagagcgtgcgggaaatc
tgcaacaactacagccaacaaggcttgccctcctaccccaacggctaccctttcctgttc
tgggagcagtacgttagtctacgccactggctcctcctctccatcagcgttgtgctcgcc
tgcacctttctggtctgcgccctttttctgctcaacccatggactgctggcatcatagtg
ttggtgctttctctcatgacagtagagctgtttggcttcatggggctgatgggaatcaag
ctgagcgctgtccctgttgtgattctcatcgcctcggtaggcatcggagtggagttcacc
gtccacgtggctctggcattcctgacggccataggggaccgtcacaagcgagcggtgctg
gctttggagcacatgtttgcaccggtgcttgatggagccttttccactttattaggtgtc
ctaatgctcgctggctcagagtttgacttcattgtcaggtatttcttcgcagtgttagcc
atcctaacagttcttggagtactgaatggattggtccttctcccagtgttattgtcatac
tttggaccgtatccagaggtatcgccagctgatggttgcagtcgcctacctagcccatct
ccagaggccccatctagagtggtacgcttctcggttcgtcctccccaaaccactggggcc
accaccaccaccaccacctcaggggcagttacagactcgtcagactcagagtacagctct
aacacaacagcatctggaatcagccaggcgatgcaggattacaacctgcactcgcacagg
gctgaggagcagcagtaccacctccaaaccagcaggggtagagctgccaggacggagaat
gaaagaagagagggatcagggcacagacgtttacctcccagacagcataatcctccagcc
tataccatgtcatcatcttttccctctcagcgctgtgattcggggactacgcaacacaac
agcagcagggaccgtaggagccagcggcgccggcaagccccgcccccggcccgcccgcgc
acagacgcttttggcactgctactgaggctgggggctatcacggcccgcccggccacaga
gaacactcagcaggccaccagggctgctcctcccccaaccctcagcctcatcaccacctc
ccacaccaacaccccggcaccgcctcgttctgtcagcccatcaccacggtaacagcatca
gcctcagtaaccgtcgccgttcaccctgcccccttctccgcccagagcccagcctcttct
tacccagaatacactgcagcagacagttacggcccgtcggggccagaggagccagaggca
accttccaagacccccacgtgccaatttacactcacacagaggccagagaagtcaagatg
gaggccatggagctccaagatttggagtcagaggcagctgagagcaaccgtggaggacag
ggtagctga
DBGET
integrated database retrieval system
