Nothobranchius furzeri (turquoise killifish): 107394359
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Entry
107394359 CDS
T05163
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107394359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107394359
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107394359
mRNA degradation factors
5'-3' decay
Decapping complex
107394359
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Methyltransf_8
LRR_RI_capping
CobA_CobO_BtuR
Motif
Other DBs
NCBI-GeneID:
107394359
NCBI-ProteinID:
XP_015828774
UniProt:
A0A1A8B7P3
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Position
sgr02:complement(24087150..24096889)
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AA seq
817 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERVGL
GGGEVEGEVDSGGSKPGSSIHRPSSSVNPPLQSSLPPFGFSSSSPGLPPQDADDRAREGG
LAESLARLILEADPAIAGVGAAERPRPSPSSSASSLSVLHSLDQPRVLPQSSSIPHQRQP
QLPPGPITSGLPSSSMLSYQQQQQLLRRGTAPMGQMNSHNIWDNSMSFGPVSVSPGLVTH
MEDSPLMSIIKEGGLPKRPPQGRSDEGRDLSERVPPPRSSSPVIGSPPVRAVPIGTPPKQ
PMSHSLNHQIHHPTTVHVRAPVPHRYPAPFPERLSPNTLLNIANSPLCRGPFAPRVGPVL
SHLQRAQLLNSQVAGFPRGGPAPLLPGGGFRPFFGGPPPPHGHRMCPPPPHGPPSHIPVR
HNTTHLHPQHRRMLTQRMQSRGGDRGRTGGDRSSRDPYSNLMTQKEKEWVTKIQMMQLQS
TDPYLDDYYYQNYYEKMEKRQDKERDISSNSKKEHATKLITPQVAKVEHTYRPVQFAGSL
GKLTVSSVNNPRKMIDAVLTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKR
FVQTPEEEREALLEQHKTNTEQLSSSLMEKEWDHRVSDELCVMIMSVRKGKRLVARLLPF
LPSSQAAAVVMAIARNLPALAKKDKQDQVLGWLVEPLSPVIQSLSSSALTDLLQELQGGE
GQLAVVLQNKFGVTMLYLILSEGERMQSCDPNCQLMDDNRWTELVFSVTRELLSVPASSL
SPPLFTPPNLLSLFSRYVDRQRLELLQDKLQISASSR
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacgctggaggaggaagatgatggacta
atagaagaggaagatgaaatagatcagttcaacgatgacaccttcggagctggcgccatc
gatgatgactggcaggaggaacacaagcgcctggctgagctggatgagcgtgttgggtta
ggaggaggtgaggttgaaggggaggtggattcaggcgggtccaagcccgggtcctccatc
caccgcccctcctcttcagtaaaccccccccttcagtcttcccttcctcccttcggtttc
tcctcgtcttcccctgggctgccaccacaagatgcagacgaccgagccagagaaggcgga
ctggccgagtcgctggcccgactcatcctggaggcagacccggccatcgctggtgtgggg
gcagccgagaggccccgtccatctcccagctcctcagcatccagcctgtcagttctgcac
agtctggatcagcccagagtcctgccgcagtcctcctccatccctcaccagcgccaaccc
cagctgcctccaggccccatcacttcaggtcttccttcctcttcgatgctgagctaccag
cagcagcagcagctgctgcggcgcggcaccgctcccatgggccagatgaactctcacaac
atctgggacaacagcatgagttttggaccggtcagcgtctcccccggactcgtcacacac
atggaggacagtccactcatgtccatcatcaaagagggcggtctcccaaagcgtcctcct
caggggaggagcgatgaaggacgggacttgtccgagcgggttccaccgccacgttcttcc
tcccctgtgattggctctcctccagtgagggccgtgcctattgggactccacccaagcag
ccgatgagccactccctgaatcaccagatccaccatcccaccacagttcacgtgagagcc
ccggtcccacacaggtaccccgccccattccctgagcgcctgtcacccaacaccctcctc
aatatagctaactcaccgttgtgtcgaggtccgttcgctcccagagtcggaccggttctg
tcccacctccagcgagcccagctgctcaactcccaggttgcaggttttcctcgtggtggc
cccgcccctttgttacctggaggaggtttccggcctttctttggaggtccccctcctcca
cacggccacaggatgtgcccgccgcctcctcacggtccccccagccacatacccgttcgc
cacaacaccacacacctccacccccagcaccgccgtatgctgacgcagcgaatgcagagc
cggggaggagaccgcggcaggactgggggggaccgcagtagcagggacccctacagtaac
ctgatgacccaaaaagaaaaggagtgggtcaccaagatccagatgatgcagctgcagagt
actgacccgtatctggatgactactactaccagaactactatgaaaagatggagaaacgt
caggacaaggagcgagacatcagcagtaacagtaagaaggaacacgccaccaagctcatt
actccccaggttgctaaggtggaacacacctacagaccagttcagtttgcgggttctctg
gggaagctgactgtgtccagcgtgaacaaccccaggaaaatgatcgacgccgtgctgaca
actcgatcagacgacgaggagaagagagagaagcaggtctggaacaagagaagacagatc
ctgtacaccgtggagaagatgtacagcctgctgctggaggtccaggactttgagaaacgg
tttgtgcagactccagaggaggagagggaggccctgctagagcagcataagaccaacacg
gagcagctgagcagctccttgatggagaaggagtgggaccacagggtgagcgacgagctg
tgtgtgatgatcatgtcggtgaggaaaggcaagcggctcgtggccagactcctccccttc
ctgccttcatcacaggctgctgctgttgtcatggcgatcgctcgtaacctccccgcctta
gccaagaaggacaaacaggaccaggtgttgggttggttagtggagccactttctcctgtc
atccagtcgctgtcaagctccgccctcacggacctgctacaggagcttcagggtggcgag
ggacagctggccgtggtgctgcagaacaagttcggagtgacgatgctgtacctgatcctg
agtgaaggagagcgaatgcagagctgcgatccaaactgtcagctcatggacgacaatcga
tggaccgagttggtgttttctgtgacgagggagctgctcagcgttccggcgtcctccctg
tctccgcccctcttcaccccccccaacttgctgtcgttgttctcgcgctacgtcgatcgg
cagaggctggagctgttacaagacaagctgcagatctctgcgtcctccaggtag
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