Nothobranchius furzeri (turquoise killifish): 107394786
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Entry
107394786 CDS
T05163
Name
(RefSeq) syndecan-3-like
KO
K16337
syndecan 3
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04514
Cell adhesion molecules
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
107394786
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107394786
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107394786
Proteoglycans [BR:
nfu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
107394786
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
TAF4
Motif
Other DBs
NCBI-GeneID:
107394786
NCBI-ProteinID:
XP_015829367
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Position
sgr19:18821759..18875121
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AA seq
444 aa
AA seq
DB search
MGGDHVCPVACASSAVSANIQGSFMVRDSWKLPWMFALTALLAHATGQTWSPPIYDEGSG
KDDYYDDEDLYSGSGGSGFPDITMRPTSVSFTTEEPLLFSTTQATSPAPSASPAAEPSPS
PEDATVATPLPTEADGESGVFYEQETEKERDRESELERERQMERERERERERERVRELER
EREREREREREREREREREKERERQRELEKIRAAQTTAVPVVTSDPTTSATESREPSAGP
DDLSITEEDEGDVYLSPEPTSPYEWEFTTSDYDALATESTPEPTTPSPSTTAKTRFPFRP
RVPMTTATRAAPTERTTRPQRPTTTQESTNEVGPAGPSGDFEIPEDRRNGLGRGVIPVDP
DLIGNTVDGGSSAAQLPQKNILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGS
YTLEEPKQATVTYQKPDKQEEFYA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggaccacgtctgtcccgtcgcgtgcgccagcagcgccgtaagcgcaaacatc
caaggcagcttcatggttcgggactcgtggaagctgccttggatgtttgcgcttacggcg
ctgctggcgcacgcgacgggacagacgtggtccccgcccatttacgacgaaggctctggg
aaggacgactattacgatgatgaggacctctactcgggctccggcggctctggatttcct
gatatcactatgaggccaacatcagtgtctttcaccacagaagagcccctcctcttctca
accacccaggcaacaagccccgccccctctgcctcacctgcagccgagcccagccccagt
ccagaagacgccaccgtggccaccccgctgcccactgaggccgacggggagagcggcgtt
ttctatgagcaggagacggagaaggagagggaccgagagagcgagctggaaagagagaga
caaatggaaagagagcgagaaagagagagggagcgggagagggtccgagaactagagagg
gagcgggagagggaaagggagcgggaacgtgaaagggagcgtgagagggaacgagagaag
gagcgggagaggcagagagagttggagaaaatccgggcggctcagaccaccgccgttccc
gtggtaaccagcgacccaacaaccagcgccacagagagtcgagaaccctccgctggtcct
gatgacctcagcatcacagaggaggacgagggggacgtgtacctgtctccggagcccacc
tcgccttacgaatgggaatttaccacctcggattatgacgcgctcgccacagagagcacg
ccagaacccacaacaccttcaccctccaccacagccaaaaccagattccccttcagaccc
agggttcccatgacgactgctacacgggcagcgccaacggagagaacgacccgcccacag
cggcccacaacgacgcaggagagtaccaacgaggtgggccctgcaggacccagcggagac
ttcgagattcccgaagatcggcgtaacggcctgggccgaggcgtgatccctgtggatccg
gatctgattggcaacacggtggatggaggtagttctgctgcccagctgcctcagaaaaac
atcctggagagaaaagaggtgttaatagctgtgattgtgggaggtgtggtgggcgccctg
ttcgccgccttcctggtgatgctgctggtgtacaggatgaagaagaaggacgagggcagc
tacacgctggaggaacccaaacaggccacagtcacctaccagaaacccgacaagcaggag
gagttttacgcgtaa
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