Nothobranchius furzeri (turquoise killifish): 107394999
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Entry
107394999 CDS
T05163
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107394999 (chd1)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107394999 (chd1)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107394999 (chd1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
107394999 (chd1)
SLIK complex
107394999 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
107394999
NCBI-ProteinID:
XP_015829739
UniProt:
A0A8C6KPL4
LinkDB
All DBs
Position
sgr02:complement(34986371..35022814)
Genome browser
AA seq
1796 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASSSSSGSSSSSSSSSSRSGSSDSGSGSDS
GSQSDSETEKSKKKAEPQIKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQRQGSSNS
GSDEDSSSSDESETSSGSKKRRNSGSSDSGSGSGSGSDSASDSSAEENSNETTSDYEPSL
QVKNRKPPTKMNSRNGKKSIQRKKASKGSSSEDENNFAKMAAAGPRRQATVNISYKEDEE
LKTDSDDLVEVLGEDVLLPEEDEFETIERVMDCRKGRKKAIGSATTVYAIEADGDPNSNF
DPSKEAGDIQYFIKWKNWAHIHNTWETEETLKLQNVRGLKKLDNFKKKEQEKKKWLQTAS
PEDIEYVSCQEELIDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGA
LIAKKFQKCIDDYMSRNQSKTIPSRDFKLLKQRPRFVPMKKQPSYIGSDGLELRDYQLDG
LNWMAHSWSKGNSCILADEMGLGKTIQTISFLNYSFHEHQLYGPFLLVVPLSTLTSWQRE
ILLWAPQMNVVVYLGDISSRNMIRTHEWMHVHSKRLKFNILLTTYEILLKDKSFLGSVNW
AFIGVDEAHRLKNDDSLLYKTMMDFKSTHRLLITGTPLQNSLKELWSLLHFIMPEKFHSW
ELFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKW
ILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDHELFNKAEALQQLIRSSG
KLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLRSRQFLFQRLDGSIKGEMRKQALD
HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVN
IYRLVTKSSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFSKEELSAI
LKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMD
DEDIDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNSNEGR
PSRNRRYSGSDSDSASDQKRPKKRGRPRTIPRENIKGFTDAEIRRFVKSYKKFGGPLERL
DAIARDAELVEKSEHDLKRLAETVHNGCVRTLRENPCGPEKSSGGRRGKVKGPTFRISGV
QVNAKLVISHEEELAPLHRAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSLLIGIYE
YGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQARADYLIKLLSKDLARKEAQKQTG
TASSRKRKPRSRKSKAPKSSKADEVTKSPSSDLPSDKRSDDDDEDDDDDDDDEMDEDKET
TQVKVSNRWTRAEKVIVKEEEEEDNEEDEQDAFSSGERDGKDKETRKDVKKEKSDSCDIK
EIMESKEKMEIMSLEPIHKQEDDTEKSDVKPEGRERVKKASDPFVHKSANAENLLVSDES
EELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLINIGDHITECLKEYS
NPDLIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSLNTHSYKHA
DVERLKDSCHHDDSSRDSYSSDRHQPSARHHESSNSKERHSSESHKKSTAEEPRKRSYAS
FSNGKDHRDRDHYRGDSRDRQDSRYYDSKHRKLEDLRFSRDHRLDIKDLSHSDHRSSYRY
HSNWQTEQRASASGARSPRDQRSPCDSRSPMGYHSPYEYSSDHRSTPEQIWSSRKT
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgtagtgaggatgaaagtgtgagcaacagcagtggagagtcaagtaattct
gatgatgagtccggctctggatcaggctcggcttcgtcctccagttcaggctccagctcc
agctcctccagtagcagcagccgatcagggagcagtgactctggaagtggctcggactct
ggcagccagtcggactctgagacagagaagtctaaaaagaaggcagaaccacagattaaa
tcaaacattgacggagcagagttttggaagtccaaccccagcattctagctgtgcagagg
tctgcgatgctcaggaaacagcagctgcagcagcaacagagacaaggctcctccaacagc
gggtctgatgaggactcctccagcagtgatgaatccgagacgtcaagtggatctaaaaag
agaagaaattcaggctcgtctgactctggatcgggttctggttctggaagtgattctgca
tccgactcctcagcggaggagaacagtaacgaaaccacatcagactatgagcccagtctt
caggtcaaaaacagaaagcctcctactaagatgaattctcggaacgggaagaaaagcatc
cagagaaagaaagcctcgaagggttcttcttctgaggatgagaataactttgccaagatg
gcggctgccggaccacgacggcaggccacagtcaacatcagctacaaggaggacgaggag
ctgaagaccgactcagacgatctggtggaggttctgggtgaagatgtcctgctgcctgaa
gaagatgagtttgaaacaatcgaaagagtgatggactgcagaaaagggagaaaaaaagca
atagggagtgcaaccactgtatacgctatagaagcagacggggaccccaacagcaacttt
gatcctagtaaagaggctggagacatccagtattttattaagtggaagaactgggcacac
atccacaacacttgggagacggaggagacactaaagttacaaaacgtcaggggcctgaag
aaactggacaatttcaagaagaaagaacaagagaaaaagaaatggctacagactgcttct
ccagaagatatagaatatgtcagttgtcaggaagaactgatagatgacctgcactctcag
taccagctagtggagcggatcataggacattcaaatcagaagtcagctgctggttaccca
gactacctttgtaaatggcagggtttgccctattcggaatgtagctgggaagatggtgct
ctgattgccaagaagttccagaaatgcattgatgactacatgagcagaaaccagtctaaa
accattccatccagagatttcaagctgttgaagcaacgacccaggtttgtacccatgaag
aaacaaccatcgtacattggaagtgatggactggagctcagagactaccagttggatggt
ttgaactggatggcccactcctggagcaaggggaacagctgtatccttgctgatgagatg
ggccttgggaagaccatccagaccatctctttcctcaactactcgtttcacgagcaccag
ctgtatggcccattcttgttggtagtgcctctttctacactaacatcctggcagagggaa
atcctcctttgggccccacaaatgaatgttgtggtctacttaggagacatcagcagcagg
aatatgatcagaacacacgagtggatgcacgttcacagcaagagactgaaattcaacatc
cttcttacaacatatgagattcttctcaaagataagtcgtttttgggcagcgttaactgg
gccttcattggggtggatgaggctcatcgactaaaaaatgacgactccctcctctacaag
actatgatggacttcaagtccactcataggctcctgatcacaggaacaccactgcagaac
tccctaaaagagctctggtctctgctgcacttcatcatgcctgaaaaatttcactcgtgg
gagttgtttgaggaggagcacggtaaaggcagagactctggctacaccagtctccataaa
gaactggaaccttttctcctgcgccgtgtcaagaaggatgttgagaaatctctgcctgct
aaagtggagcaaatcctcagggtggagatgagcgcaatccagaaacagtattacaagtgg
attctaacccggaactacaaggctctgagtaaaggtaccaaaggcagcacgtctggcttc
ctgaacatcatgatggagctgaagaagtgctgtaaccactgttacctcatcaagccacca
gaggaccatgagctgttcaacaaggctgaagctttacagcaactgatccgcagcagtggc
aagctagtccttttggataagctgcttgtgcgtttgaaggagcgaggtcatcgagttctc
atcttctcccagatggtacgaatgcttgacatcctggctgaatacttgagaagccggcag
ttccttttccagagactagatggctccatcaaaggggagatgcggaagcaggcgttggat
cattttaacgcagagggttcagaggatttctgcttcctgttgtctacacgtgctggtggc
cttggtatcaatctagcatcagctgacacggtggtgatctttgactctgactggaaccct
caaaatgacctgcaggcccaggctagagcccacaggattggtcagaagagacaggtaaac
atctatcgactggtgacaaagagctcagtggaggaggatatcatcgagagggccaaaaag
aaaatggttttagaccatcttgtcattcagagaatggataccacaggaaaaactgtcctc
catactggtgcagctccctccagttcagcgccgttcagtaaggaggagctctcggccatt
ttgaaatttggtgctgaggagcttttcaaggagccagaaggggaagagcaggagcctcag
gaaatggacatcgatgaaatcctgaagagagcagagactcgtgaaaatgacccggggccg
tccaccgtaggagaggagctgctgtctcagttcaaggttgccaacttctccatgatggac
gatgaggatatagatatcgactctgagcgaagtcagcggagctgggatgacatcatccca
gaggagcaaaggaggaggatggaggaggaagagagacaaaaagagctagaagaaatttac
ttgttaccacgcatgaggaattgtgcaaaacagatcagctttaactccaacgagggtcgg
cccagcagaaacaggagatactctggctccgatagcgactctgcctcagaccaaaaaaga
ccaaaaaaacgagggcgacctcggaccattccacgggaaaatatcaaaggttttactgat
gctgagatccgcaggtttgtcaagagttacaaaaaatttggaggaccgctggaaaggttg
gatgccattgctcgtgatgctgagctggttgagaagtccgaacacgacctgaagcgattg
gcagaaactgttcataacgggtgtgtgagaacgctacgggaaaacccctgtggaccagag
aagtcatccgggggaagaagagggaaggtgaaaggccctacattcaggatttctggggtc
caggtcaatgccaaactcgtcatctctcatgaagaagaattggctccactccacagagcc
attcctgctgatccagaggagagaaagaagtatatgattccgtgccactcaaaggctgca
cactttgacatcgagtgggggaaggaggacgactccagtctccttattggaatctatgaa
tatggttacggcagctgggagatgatcaagatggacccggacctaaatctcacacataag
ctgctcccagatgatcctgacaagaagcctcaggccaaacagctacaagccagagcagac
tacctcatcaaactactcagcaaggacctggccagaaaggaagcacagaaacaaacggga
acagcgagttcacgtaagaggaaacccagaagtaggaagagcaaagctccgaaatcatca
aaggcagacgaggtgacaaagagtccttcttcagacctcccatcagacaagaggtcggat
gacgatgacgaggatgatgatgacgacgacgacgatgaaatggatgaagataaggagacg
acccaggtaaaggtctccaacagatggacacgagcagagaaggtgattgtgaaggaggag
gaagaggaggacaatgaggaggatgagcaggatgctttctcatcaggggagagggatggc
aaagataaagaaacaagaaaagatgtgaaaaaggagaagagcgacagctgtgacattaaa
gagataatggagtcaaaggaaaagatggagatcatgtctctggagccgatacataaacag
gaggacgacaccgagaagagtgatgtcaagcctgaggggcgagaacgcgtgaagaaagcc
tccgacccgtttgtccataaatcagccaacgcagaaaacctgctggtgtctgacgagtcc
gaggagctggaccagaggaccttcagtgtgtgtaaagagaggatgcggccggtgaaggct
gccctgaagcagctggacaggccagagaaaggcctgtcagagcgtgagcagctggaacac
accaggcagtgcctcattaacatcggagaccacatcacagagtgcttgaaggaatattca
aatcctgacctgatcaaacagtggaggaagaatctctggatattcgtttccaagtttacg
gagtttgatgcaagaaaactacacaagttatataaacatgcaatcaaaaaaagacaagaa
aatgctcaggcaatggagcagaacactagaagtctgaacactcacagctacaagcatgcc
gatgtggagagactgaaggacagctgtcaccatgatgacagcagcagggacagctacagc
tctgacaggcatcagccttcagctcgacatcacgagagcagcaacagtaaagagagacac
agctcagagtctcacaagaagagcacagcagaggaacccaggaaaaggtcctacgcctcc
ttcagcaacggcaaagatcatcgagacagagaccactacagaggagacagtcgggacaga
caggacagcagatactacgacagtaagcacagaaagctggaggacctccggttcagcagg
gaccatcggctggacataaaggatctgtcccactcggaccaccgctcttcttaccgctac
cactcgaactggcagacagagcagcgtgcgtcggcgagtggggcccgctctccccgagac
cagcgctcaccttgtgactctcgctcgccaatggggtatcactcaccttacgaatactcg
tcggaccacaggagtacaccagagcagatctggagcagccgcaagacataa
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integrated database retrieval system
