Nothobranchius furzeri (turquoise killifish): 107396104
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Entry
107396104 CDS
T05163
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107396104 (nrde2)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107396104 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Suf
DUF6033
Motif
Other DBs
NCBI-GeneID:
107396104
NCBI-ProteinID:
XP_015831136
UniProt:
A0A9D3BIU4
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MALFPAFAEAANTKVENSSEELDWLNNKSFQTGDAISLHSRILEKTGEKPYQKASRDASS
SQGEEREVGDGPPRKKKKKSEKKRKKKKKHKKRSERNSSSNGSDSDTVYPSDLIKQEEEE
DRHQDTSLASRFSWLDDLQAPTGHPFCVDRKPDSANWTYKSLYRGDVARYRRKGSSTLGL
DSQRQGVSWEESETKKRQKGGDSKKTADRYFSTASRQLLKSEPPLPVSPVAPDALQLSSY
LPVGDVDEKNKRQESGSERFPTLSVNPLGVYDSSTALWLQGKGQQDDQKRDLETEGNPVS
VVGRTGEFNRRLREQPSDTQLWIQFIHYQDEVSSVAFEEEQGGESAEHRKSSYRAILDKK
LSIAERAVAMNPSCIALQLERLRICQELWEPSALAKEWKKLVFLHPNSAPMWREYLLFTQ
SYFSSFTVTKVNSAYGKCLSTLSAVRDGSMLSHPAPPGLEEDMLDIFTQQCHFLRQSGHS
EKAISLFQAMIDFTFFKPDSVKKLSTKQQVEFFEPFWDSGEARVGEVGARGWKAWMIQQE
QGGWLQPGAEDEDEEEEEEEEEVKDRSLPRGTVWLDVESMREAAHWLPWRPDKAKGQSEE
DCEDPDRQVLFDDIGSSLIVLSSSELQFQLLLKFLSFLGLPVDSVISSPPCQPGLLLENL
SLLTQGNDLQRPLTSYELPDLGMNSVGHMTTLQGVRKWTGLGNQGEKFLTNVFGIIQPVL
PPLRRGFLSLSWIRYEKLKVLRCLHSGNKKRLRSQGKSSKRVAKRLLKEPDNRSSLVLWR
EYAHLEWILGNLDEARKVFSTATAMGGTKGPSGPSLCELCLLWSQLEAEDGAKGQTGQHA
DATMSPAVRVLTRLAEGTSSQSISPVSILKARRSYEQALSSSLSALDQNIQNLQSDRKGS
KEDLQEEKLMLRGLVGCYALFQYLTVGIQAALTVYSQARDKMEELHRKRAPDSVKPGGME
ASFPAADSSLTDRRLASECEALAVQQVALLRFHTNISVFPLVTLRQTLTSALSAWPSSAP
LWCIYLQLENHYHSAGRARRFFHAVTRDSSSVTPRLFAIVAEQQRKQLVDAAQRSCCFDE
PLPVLPENGLSNRIRGLFESAIATEMGAHCPLLWRMYVHFLMSEGKADKARGIFYKGLQN
IPWAKGLYMDAVQMFPEHLQEFIDLMTEKELRLRLPLEELDILLED
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttcccagcttttgctgaagctgctaataccaaagttgagaattcgtcagaa
gaattagattggctgaacaacaaaagcttccagactggagacgccatctcgcttcacagt
cgtatcttagagaagactggcgagaagccataccaaaaggcgtcaagggatgctagctcc
agtcagggagaagaaagggaagtgggtgatgggccaccaagaaagaagaaaaagaagagt
gagaagaaaagaaaaaagaagaaaaagcataaaaagagaagtgagaggaattcgagcagc
aatggatctgattctgacaccgtctatcccagtgatctcataaagcaagaggaagaggaa
gacaggcatcaggacacttccttagcaagtcgtttctcctggttggatgacctccaggcg
cccacagggcacccattctgtgtggaccgtaaaccggactcggccaactggacttacaag
tctctgtacagaggagatgtagccaggtacagaaggaaaggcagctccactttgggtctg
gactctcagagacagggagtcagctgggaggagtcagaaacaaagaagagacagaaagga
ggggacagtaagaaaacagctgacagatacttttctacggccagtcggcagctgctgaag
tcagagccgcctcttcctgtttcacctgtggctcctgatgccctccagctgagctcctac
ctccccgtgggtgatgttgatgagaaaaacaaaagacaagagtcaggtagtgaaagattt
ccaacgttgtccgtaaatcccctcggagtgtacgactcgtccacggctctctggctgcag
gggaaaggacagcaggacgatcaaaaacgggacttagagacagaaggaaaccctgtctct
gtagtcgggaggactggagagtttaaccggcggctcagagagcagccgtcagacacacag
ctgtggatacagttcatacactaccaggatgaagtgagttctgtggcatttgaggaagag
cagggtggtgaatcagcagagcatcgtaagtcctcctacagagccattctggacaaaaaa
ctgagcatcgcagagcgagccgtggctatgaacccgtcctgcatcgccctgcagctcgag
aggctcagaatctgtcaggagctctgggaaccctcagctctggctaaagaatggaagaaa
ctggtgttcctccatccaaacagcgcccccatgtggagggagtatctgctcttcactcag
agttacttcagctcctttactgtaaccaaagtcaactctgcgtatggaaagtgtctgagc
acactcagcgccgtgcgagatggcagcatgctgtctcatccagctccaccaggactagaa
gaagacatgctggatatcttcacccaacagtgtcatttcctacgacagtctggtcactct
gagaaggccatttctctgtttcaggccatgatcgacttcaccttcttcaaacctgacagt
gtaaaaaaactgtccaccaagcagcaggtggagttcttcgagccgttctgggacagcggg
gaggcgagagttggggaggtgggggccagaggatggaaggcctggatgatccaacaagaa
caaggagggtggcttcaacccggtgcagaagatgaggacgaggaggaggaggaagaagaa
gaggaggtgaaggacaggagtctacccaggggaacggtgtggctggatgtagagtcgatg
cgtgaagcagctcactggttaccgtggagaccagacaaagctaagggccaatcagaggag
gactgtgaggatccagacagacaggtgctgtttgacgacatcggttcgtccctgattgtt
ctgtcttcatcagaacttcagttccagcttcttctcaagttcttgtcctttctgggtctg
cctgtggactctgtgatctcctctcctccttgtcagccgggcctgcttctggagaacctt
tctctgctcactcagggtaacgacctccagcgtcctctgacctcctatgagctacctgac
cttgggatgaactctgtaggtcacatgaccactctacagggagtaaggaagtggacgggg
ctcgggaatcagggtgagaagttcctcaccaacgtgtttgggataatccagcccgtcctt
cctcctcttcgccgagggtttctgtcactcagctggatccgatacgagaaactcaaggtt
ttgcgctgcctgcacagcggcaataagaagcgtcttcgctctcaggggaagagcagcaag
cgggtcgctaaaaggctgctcaaagaacccgacaatcgctcttctttggtgttgtggcgg
gagtacgctcacttggagtggatcctgggaaatctggatgaagctcggaaggttttctcc
acggccacagcgatgggaggaaccaaaggcccgagtgggcccagtctgtgtgagctgtgc
ctcctgtggtcccagttggaggcagaggacggagcgaaggggcaaacgggccaacacgct
gatgcaacaatgtcaccggcagtccgtgtgctgacccggctagcagagggaacatcctct
cagtccatttccccggtttccatcctgaaagcaaggaggtcctatgagcaggctctgagt
agcagcttgtcagctctggaccagaacattcagaatcttcaatcagacagaaaaggaagt
aaagaagacctgcaggaagagaagctgatgttaagaggcctggttggctgttacgctctg
tttcagtacctaacagtcggcatccaagcggctttgaccgtctacagccaggccagagac
aagatggaggagctgcaccgaaaacgggcgcctgactcggttaaacccggcggcatggaa
gcgagtttccctgcagctgattccagcctcactgaccggcgtttggcctcagagtgtgag
gcgctggcggtgcagcaggtggcgctgctgaggttccacaccaacatcagcgtgtttcct
ttggtgacgctgagacagacgctcacttctgccctctccgcctggcccagcagcgccccg
ctctggtgcatttaccttcagctggagaaccattaccacagtgccggccgggcccgccgt
tttttccacgctgtaaccagagacagcagcagcgttacaccccgtctgtttgctattgtt
gctgaacaacaaaggaagcagctggtggacgctgctcagagatcttgttgcttcgatgag
cccctacccgtactgccagaaaacggcctcagcaaccgaatccgaggactgtttgagagc
gccatagcaacagagatgggtgctcactgtcctttattgtggaggatgtacgtccacttc
ctgatgtctgaaggtaaagcagataaggccagagggatcttttataagggcttgcagaac
atcccctgggcgaagggcttgtacatggatgcagtgcagatgtttcctgagcatctgcag
gagttcatagacctgatgacggagaaggagctgcgactgaggctgcctttggaagagctg
gatatactgctggaggactga
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