Nothobranchius furzeri (turquoise killifish): 107396366
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Entry
107396366 CDS
T05163
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nfu03036
]
107396366 (hfm1)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107396366 (hfm1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
107396366 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
ResIII
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
107396366
NCBI-ProteinID:
XP_015831542
LinkDB
All DBs
Position
Unknown
AA seq
1518 aa
AA seq
DB search
MMDTDDCTLTLDRLFFEKPTIHKVKPLNQDVTPWQLEASPALMHVPATQEMQKEAESLST
HFSFTQKPQMFSPPLKKLHGLKDSSEISLCGLNNEEREADETHGGTSGCEGLYRGEGFTD
YFEGSHQSNRTVEESLLDSGHVTSNRWLSQDHRKSPPLRRSLFNIPRLDIRGDLSTKTDS
NRLSSSHTMSRLQTFCSRVAMTTGSPALQPPQAAVGLVAPFSPEPPPLDPCAASSRPSQP
AGLQDRGTKRALVPPMMPQPLHIQGSSGPGVLRPVSELPVKFRSIFSDFPFFNYVQSKAL
DDVLYTNRNFVACAPTGSGKTVLFELAIIRLLMETPEPWRDVKAVYMAPIKALCSQCSEN
WKKKFGPLGLSCKELTGDTEIDDFFEIQDSQIILTTPEKWDSMTRKWKDNCLLQLVKLFL
IDEVHVVKDATRGATLEVVVSRMKAVNAYRASQNPEAGLSMRFVAVSATIPNISDLADWL
SNESGPATYLSMDENHRPVKLRKVVLGFPCSPNQTEFKFDLSLNYKMANIIQTYSDQKPT
LVFCSTRKGVQQSAAVLAKDARFIISSEHKQRLMKYASSILDSKLKDLLMLGIGYHHAGV
GLSDRKLIEEAFALGDLPVLFTTRTLAMGVNLPAHLVVIKSTMQYIAGSCEEYGEADILQ
MIGRAGRPQFDSSATAVIMTKVQTRDKYTNLMNGMEIIESSLHGHLVEHLNAEIVLQTIS
DVNMALDWIRSTYLYIRALKNPTHYGFSADLDRCGIEAKLQELCLKNLNALSAIDLIRMD
EDINIKPTEAGRLMARFCIAFDTMEQFSKVVGTESLFDLVSLVSKSREFSDIQLRVNEKR
ALNTLNRDKNRRTIRFPLEGKIKTSEMKVNCLIQAQMSSISIQDFGLTQDTAKIFRIGMR
ISKCLSEFLSHRSEAVFPALLNSLILAKCFRAKIWENSHFVSKQLEKIGQTLSTAMVNAG
LTTFSQIEQTNPRELELILNRHPPFGNQIRDSVRHLPKYSVTLEQLPRFGSDTAEVVARV
NLKNQADLLSRRTAPGHHFVSLIIGDADNNVAFLQKITDSMLLKSGSWSKKIQVAKPVKG
NEISVHLISSDYVGLDIQQRFTMQFSASRTFGSEIPYNTIEQRPQLTAQTPLSAAQRDKA
SPAEEQGSTYPGHKRQCNHLCKNKTLCAHDCCKVGVAVGRKRSTNHESSFSSYLTDLRNR
SDALVQTPVKRLKMGNGPLAVSMQRFAFKPKENLSPVSCYSENEYKAGQMDLAADDSSQL
KDISCLNDPDPGTFSDADGAENRTRTTQNPAATQQMFLKDSSARIMSRTGGEPLKSGVNQ
TKTSTSVHSNWSAATSEQEALQIPAVTFDLGNEWDDWEDFDEENLLHTAAALVPQCRTKP
EPQIQQRVDYTSGCPTGSSPVFLSCSQTKCQGTTITTPLRSISAAASCEIRKFDPSPITN
ILNDEITGKTPEMFFKPPPETQVNRRCDFFHTVDVPLRSDLSLDRSFTKGFHPNNKDVSS
VSCVHHQQQRGGNVLWHL
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgatggacacagatgactgcactttgaccctggacagattgtttttcgagaaacctact
attcacaaggtgaaacctctgaaccaagatgttactccatggcagctagaagcatctcca
gctcttatgcatgttccagccacccaggaaatgcaaaaggaggcagagtctctttctacc
catttcagtttcacacagaaaccccagatgtttagtcctcctttaaagaagctacatggc
ctaaaggactcatctgagatcagtttgtgcggtttaaacaacgaggagagagaggctgat
gaaacccacggtggtaccagtggatgtgaaggtctttacaggggtgaagggtttacggat
tactttgagggtagccatcagagtaacaggactgtagaagaatccctgctggactccggc
catgtgaccagcaacagatggctgtctcaggatcacagaaaaagtcctcctttacgaaga
agcttgttcaatattccacgtttggacatcagaggcgacttgtcaaccaaaaccgactcc
aaccgactcagtagcagccatacaatgtccagacttcaaactttttgcagtcgggttgcc
atgacaacgggatctcctgctcttcagccaccacaagcagcagttggccttgtagctcct
ttttcccctgagccacctcctctggacccttgtgcagcgagcagccggccctcccagcca
gcaggactgcaggataggggcacaaaaagagccttggttccacccatgatgccccagccg
ctccacatacaaggatcttctggacctggagtcctgcgaccggtgtcggaacttcctgta
aagttcaggtccatcttcagtgacttccccttcttcaactacgttcagtccaaagctcta
gatgatgtgctttacaccaacaggaacttcgttgcctgtgctccgacaggatcaggtaaa
accgtgctgtttgagctggccattattcgtctgttgatggagacaccagagccatggaga
gatgtcaaggctgtatatatggctcccatcaaggcgctgtgcagtcagtgctctgagaac
tggaagaagaaatttggtcctttggggctgagctgcaaagaactgactggtgacacagag
attgacgacttctttgagattcaagactcccaaatcatcttgaccactcctgaaaaatgg
gacagcatgaccaggaaatggaaggataactgcttgcttcagctcgtcaaactcttcctc
attgatgaggtgcatgtggtgaaagatgcaactcgtggtgccacactggaagtggtggtg
agcagaatgaaggcggtgaatgcctacagagcatcccagaatccagaggcaggcctctcc
atgagatttgtagctgtatcagccaccatccccaacatatctgatctagcagactggctg
tcaaatgagagcgggccggctacctatctgagtatggatgagaaccaccgtcctgtgaag
cttcggaaggtggtgctgggattcccctgcagcccaaaccaaacagagttcaagtttgac
ttgtcactcaactacaagatggcgaacatcatacagacttactccgatcagaagccgaca
ctggtgttttgctcgacaagaaaaggagttcagcagtctgctgcagttctggccaaggat
gcccgattcatcattagctctgaacacaaacaaaggttgatgaagtatgctagctctatt
ctggattctaaattaaaagatctgctgatgttgggaatcggataccaccatgcaggagtt
ggcttgtctgataggaagctgatcgaagaggccttcgccctgggagacctgccggttctt
tttaccaccaggactctggccatgggtgtaaaccttcctgctcacctggtggtaatcaag
tccacaatgcagtacattgcaggctcctgcgaggagtacggtgaggcagacatcctgcag
atgattggccgagctggccgcccccagtttgattcatcagcgacggcagtgatcatgacc
aaagtccaaaccagagacaagtacacgaatctaatgaatgggatggaaatcatagagagc
agcttgcacggccacctggtggaacatctgaatgctgagattgttcttcaaaccatcagt
gatgtcaacatggctctagactggatccgctccacctacctctacatcagagctctcaag
aaccccacacactatggtttctccgctgacttagacagatgtggcattgaagctaaatta
caagaactttgtctgaagaacctcaatgcattgtcggccattgatttaatccgtatggat
gaagacatcaacatcaaaccaacagaggccggcaggttgatggcgaggttttgtattgct
tttgacacgatggaacagttcagcaaagttgttggcaccgagagcctgtttgatctggtc
agtctggtgtctaagagcagagagttcagtgacattcagctgagagtgaatgagaagaga
gctctgaacaccctgaacagggacaagaacaggagaaccatcagatttcctcttgaggga
aaaattaaaaccagcgagatgaaagtgaactgcttgattcaggctcagatgagttccatc
tcgattcaggattttggactgactcaggacacagcaaagatcttcaggattgggatgcgc
atcagtaaatgcctgtcagagttcctgagccatcgatccgaagcggtttttcctgccctc
ctcaactctctgatcctggctaagtgctttagagccaagatttgggagaactcacacttt
gtctccaaacagctggagaagataggccagacgttgtcaacagcgatggtgaacgctgga
ctcacaaccttcagccaaatagagcaaacaaaccccagagagctggagctgattctgaac
agacatccgccctttggaaaccagatcagagattctgtcagacatctcccaaagtacagc
gttactctggagcagcttcccaggttcggcagtgacacagctgaggttgtggccagggtc
aaccttaaaaaccaggctgatctgctgtccaggagaaccgctccaggacaccactttgtc
tccctgatcattggcgacgctgacaacaacgtcgcatttctgcagaaaatcacagactcc
atgctgctcaaaagtggcagctggtccaagaagatacaagtggcaaaacctgtgaaagga
aatgagatcagtgtccatcttatcagctcagattatgtggggctggacatccagcagagg
tttaccatgcagttctcagcatccaggacgtttgggtcagaaatcccatacaacacaata
gaacagagaccccaactcaccgctcagacaccgctgtctgcagcgcagagggacaaggcc
tcccctgcagaggaacaaggcagcacatacccaggccataaaagacagtgcaaccacctc
tgcaagaataagactctttgtgctcatgactgttgtaaagttggtgtagccgtgggacgg
aaaaggtccacaaaccacgagtccagcttctcttcatacttgactgacttgaggaacagg
agtgatgcgctggtccagaccccggtcaaacgactgaagatgggcaacgggccgttggct
gtcagcatgcagcggtttgctttcaaacccaaagaaaacctttctccagtttcctgctac
agcgagaatgagtataaagctggacagatggacctggcggctgacgacagttctcagctg
aaggacataagttgtctgaatgatcctgatccagggacattttcggatgcagacggcgca
gagaaccgaaccagaaccactcagaatcccgctgcaacacagcaaatgtttttaaaagat
tcctcagcgaggataatgtccagaacaggtggtgagcccctgaagtcaggtgtaaaccag
actaaaaccagcacctcggtccactcaaactggtctgcagcaacatcagaacaagaagct
ctccaaattccagctgtcacctttgatctgggaaatgagtgggacgactgggaagacttt
gatgaagaaaacctactacatacagctgcagctttggttcctcagtgtagaaccaaacca
gaacctcagatccagcagcgtgttgattacacgtcaggctgtcccactggatcttcacca
gtgtttctcagctgctcacaaaccaaatgtcaggggaccaccatcactacaccactgagg
tccatttcagcagcagcaagttgtgaaatcaggaagtttgatccgtctccgataacaaac
attctcaatgatgagatcacaggaaaaacacctgagatgttcttcaaaccaccaccagag
acacaagtcaacagaaggtgtgatttctttcacacagttgatgttccattaagatctgac
ttgtcccttgatagaagtttcactaaaggatttcatcctaacaataaggatgtttcttct
gtttcatgcgttcatcaccagcagcaaagaggaggaaacgttctttggcatctttga
DBGET
integrated database retrieval system
