Nothobranchius furzeri (turquoise killifish): 107396663
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Entry
107396663 CDS
T05163
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107396663 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107396663 (pcf11)
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107396663 (pcf11)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107396663 (pcf11)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107396663 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
107396663
NCBI-ProteinID:
XP_015831960
LinkDB
All DBs
Position
Unknown
AA seq
1560 aa
AA seq
DB search
MKNKPNPAEFLSPAAKRLSNVLMDSLLMSGDGTDHTAVGFSGSLSSKMDDAVAREDACRE
YQSSLEDLTFNSKPHINMLTILAEENVQFAKDIVAIIEAQISKAPTMEKLPVLYLVDSIV
KNVGGEYLAVFAKNLITSFICVFEKVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNSL
DPAWPIKPLPSPTNAIHVNPKFLKQSEEASSPKAAPTHPPAVTPVPKPASQLAPVISQSS
LTQEQLIRQQLLAKQKQLLELQQKKIELELEQTKAQLMGQAGFISPAPTASSSLPKPDTV
VRPWVPPQPQPDPKPSNRDPRLTRVVPPAAPQPKEQLAVKRESPALPPERRLPEKPTQLD
KPGTRKGFSDDKSKSPSPLARSLNIQNKQLEAKFQKSTDGPRKDPRLKKRPQDKAGMSRE
DEQKKKRCSDKKDREEAPRGPDSLRVSKTKLVNGSVVTHDRNESSERPDFKTGGNARTHA
RKRTRSRSPAGSPKRKDRRSPKSKTRSRSPSPSHKPGKPQRIRAGDLQHGKPGRDERLGL
KKNKSERRPKRLVEDHHSQSRDSPRSHEGGSKEAKEAHRWRSGWEENKHPKPSEDPHTKA
GPQRHKSYSTPTRPSTPRNPKHRLSVDANLQIPEVLNSASKKDLLQRASRRLESGEISLE
DFLNMAHQIKHFFQYQEEKQQRTKGWEGPGEFPVKKRSLLSSPPSAQSHPHEAMDPAELS
YYEHKSKLRTTRVNHRVMGEETQESQEDGTEMGQGEKTSDLISGNPPSHRYSRGPQDRPG
ERRSKEHDESRPALAPMIEDYNHGKEFPKLKGLRFRRRADPRESSEREWTSPLTERQLYD
DREEQKSGYDAPRRYPTSADQRRQEGPSGTGVHRNSSSSVGPEAPLPRFERERLSPLHQK
DTADSSPIPRFESPNSEHSDDGPLDVPHSHPPHKPILLRGGPLPSVQQHEDSPGLTPPHE
ANHPPARYSGPGHMGPSRSRPGWFEGGAPPGCYNDPQFEGPQHPGPSRFDGGGPPYQVEN
TDGSGSCEGHHMAHGPVRGDGMGRFDGSPQGPVRFGGPMDPQPPVTFEGPLLGPGPLEGP
IQHFNNAGPGSMGFQQQRPLRFEPPGNQMGLLRFEGPGQPGPRFDLPSGPLHGGPAGFDY
PPGQQGGPRFVQHNPQAPVQPMAPPIYDNSIPSQQNFNMGPQRFPDPLNPQFPTGPNMQQ
PGSFNMQPLPFSHSVPRPFFTPSAPPMGQQQPMNMMNQNFLPQNPGPYGQQTQPVAPPEN
HFGQVDVNDLLSKLVSNGIIKPLSQVDAAPTPSEFTLVATAPPAEEEEEEEPEVEEDDFP
DLTSFSIEHMKQRYESVVTKLYSGNQCCLCSMRFTTAQTDMYADHLDWHFRQNHAGKVAS
KKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKENEEEVQKSQAAAKEKEFQSVRAAK
DQVGELCEICQESFETYWVEEEEDWFLKNAIRVDEKNFHPACFEDYKNTSSYLDVTPSPS
KLLTEHPLGTFLKMEEEKVTSCDVITVKQEVPSESCELPQEDQNQGQDVLTDTVKSENTA
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataaaccaaacccggcggagtttctctcacctgcggcaaaacggttatctaat
gtgttaatggactctttgctgatgagtggtgatggtaccgatcatactgcagtaggtttc
tccgggtcgctgagctcgaagatggacgacgcggtggcgagggaagacgcctgtcgagag
taccagtcctctctggaagacctgacgttcaacagcaagccgcacatcaacatgctcact
atcctggctgaagagaacgtccagttcgccaaggatatcgtcgcaattattgaagcgcaa
ataagcaaggccccaaccatggagaagcttccggttttgtacttagtggattccatagtg
aagaatgttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatt
tgtgtctttgaaaaggtagatgaaaacaccaggaagagtctgttcaagctgcgctccaca
tgggacgaagtgttccctctgaagaagctgtacgctctagatgtccgggtcaactccctg
gacccggcctggcctatcaagccactgccgtcgcccaccaacgccattcatgtcaacccc
aagttcttaaagcagtctgaggaggcgtcctctccaaaggcagcccccacccatcctcct
gcagtgacccctgtccctaagcccgcttcccagctagctccggtcatcagccagtccagc
ctgacccaggagcagctgatccggcagcagctgctggccaaacagaagcagcttctggag
cttcagcagaagaagatcgagttggagctggagcagaccaaagcacagctgatgggacag
gctggattcatctccccagcaccaacagcatccagcagcctgccgaagcctgatactgtg
gtccgaccttgggtccccccccagcctcagcctgaccctaaaccttccaacagagacccc
cgtcttacccgtgtcgtccccccagctgccccccagcctaaagagcagttggctgtaaag
agggagagccctgctcttcctcctgaaaggagactgccagagaaacccacccagctggac
aaacctgggacgaggaagggtttttcagatgacaagtccaagtctccgtctccactggcc
agaagtctcaacattcaaaacaagcaactggaagccaagtttcaaaaatccacagatggc
ccaagaaaggatcctaggctgaagaaacgacctcaggacaaggcggggatgtccagagaa
gacgaacagaagaagaaacgctgcagtgacaagaaggatcgggaggaggctccccgggga
ccagactccttaagggtcagcaagaccaaactggtaaatggttctgtggtcacacatgac
cgcaatgagtccagtgaaaggccagacttcaaaaccggaggaaacgcacgaactcacgca
aggaaacgaacccgatcacgttcacccgctggctcccccaagagaaaggacaggcgctca
cctaagagcaaaacccggagccgctccccttccccgtcccacaaaccaggcaagcctcaa
aggatcagagcaggtgacctgcagcacggcaagccaggccgggacgaacgcctcgggctc
aagaaaaacaaatctgagaggaggccaaagaggctggtggaggaccaccactctcagtcc
agagactctccacgcagtcatgaaggaggaagcaaggaagctaaggaggcgcatcgctgg
aggagcggctgggaggagaacaaacaccctaaaccatcagaagatcctcacacgaaggct
ggaccccagagacacaagtcctacagcaccccgacccgacccagtaccccccgcaaccca
aagcatcgcctcagtgtggacgccaacctgcagatccctgaggttctcaactctgcctcc
aagaaggaccttctgcaaagggccagcagacgtttggagagtggtgagatttccctggag
gacttcctgaacatggcccatcagattaaacacttctttcagtatcaggaggagaagcag
cagcgcaccaagggttgggagggaccaggagagttccctgtcaagaaacgttccctgctg
agctcgcccccctctgctcagtctcacccgcatgaagccatggaccccgcagagttgtct
tactatgaacacaagtccaagctgaggacaacgcgggtcaaccaccgagtcatgggagag
gagacgcaggagtcccaggaggatggcacagaaatgggacaaggcgaaaagacatcagac
ctgatttccgggaaccctccatcacatcggtacagccgagggccccaggacaggccaggt
gaaaggaggagtaaagaacacgatgagtcgaggcccgctcttgcccccatgattgaggac
tacaaccacggcaaggagttccccaagctgaagggtctccgtttcaggaggagagctgat
cccagagagtccagtgaacgagagtggacctcaccgctgacggagcgccagctctatgat
gaccgagaggagcagaagagcggctacgatgctccgcggaggtaccccacctctgccgac
caacgcagacaggaggggccttctgggacgggggttcaccggaactcttccagctctgtt
ggtccggaggctccgcttcctcgctttgagcgagagcggttgtcccctctccatcagaaa
gacactgcagactcgagtccgatcccacgctttgagagtcctaacagcgagcactcggac
gatggacccctggacgtcccccattctcatcctcctcacaaacccattctgcttcgcggg
ggcccgctgccctctgttcaacagcacgaagactccccaggacttacccctcctcatgaa
gccaaccacccccccgctcggtacagtggacctggacacatgggcccctccaggtcccgg
cctggctggtttgagggtggtgccccccctgggtgctataatgatcctcagtttgaaggg
ccccaacatccaggtcccagcaggtttgatggtggggggccaccttatcaagtggagaac
actgacggctctgggtcttgtgaagggcaccacatggctcatggcccagtgagaggagat
gggatgggaaggtttgatgggtcccctcagggaccagtcaggtttgggggtcccatggac
ccgcagccccctgtcacatttgagggtcccctgctagggccaggccccttagagggccct
atacaacacttcaacaatgcaggacccggttcaatgggcttccagcaacagcggcctctc
cgctttgagccccccggtaaccagatgggtctcctgaggtttgaggggcccggtcagccg
ggtcccaggtttgacctgcccagtgggcctcttcatggtggaccagcaggctttgattat
ccccctggccagcagggggggcccaggtttgtccaacacaatcctcaggcccccgttcag
ccgatggccccgcccatctacgacaactccataccctctcagcagaacttcaacatgggc
ccgcagaggttcccggaccctctgaaccctcagttccctacgggtcccaacatgcaacag
ccaggaagcttcaacatgcagccgctgccgttcagccactcggttcctagacccttcttc
accccctcggcaccccccatgggccagcagcagcctatgaacatgatgaaccagaacttc
ctgccccagaaccctgggccttatggacagcagactcaacctgtggctcctccagagaac
cacttcggtcaggtagacgttaacgacctgctctctaaactcgtctccaacggaatcatt
aaaccgctgtctcaagtggacgctgcacccacgcctagcgaatttactctggttgccaca
gcgccccctgctgaggaggaggaagaggaggagccagaggtggaggaggatgacttccca
gatctgaccagtttcagcattgaacacatgaagcagcgctacgagagcgtggtgacaaag
ctgtactcggggaaccagtgctgtctctgtagcatgcgcttcaccaccgcgcagacggac
atgtacgcagaccacctggactggcacttcagacagaaccacgccgggaaggtggccagc
aagaaggtcacacaccgccgctggtactacagtctgacggactggatcgagtttgaggag
atcgctgacctggaggaacgggccaagagtcagttttttgagaaggagaatgaagaggag
gtgcagaaaagccaggcagctgccaaggagaaggagttccagagtgtcagagccgccaag
gaccaagtgggggagttgtgtgaaatctgccaggaatcgtttgagacctactgggttgag
gaagaagaggactggttcctgaagaacgccatcagggttgatgagaagaacttccacccc
gcctgctttgaagattacaaaaatacctcgtcctacttggacgtcaccccatcacccagc
aagctgctgactgagcatccactgggcaccttcttgaagatggaggaagagaaggtgact
tcctgtgatgtcatcacagtgaaacaggaagtacctagtgagtcatgtgagctgcctcag
gaggatcagaatcagggtcaggatgttttaacggacactgtgaagtcggagaacacggcg
tga
DBGET
integrated database retrieval system
