Neisseria flavescens: FAH67_09180
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Entry
FAH67_09180 CDS
T06171
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nfv
Neisseria flavescens
Pathway
nfv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAH67_09180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfv03019
]
FAH67_09180
03009 Ribosome biogenesis [BR:
nfv03009
]
FAH67_09180
Enzymes [BR:
nfv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAH67_09180
Messenger RNA biogenesis [BR:
nfv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAH67_09180
Ribosome biogenesis [BR:
nfv03009
]
Prokaryotic type
rRNA processing factors
FAH67_09180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
ssDNA_TraI_N
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
QCL69565
LinkDB
All DBs
Position
1783966..1786848
Genome browser
AA seq
960 aa
AA seq
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MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFRDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDIPNGMSIIARTAGIGRSAEELEW
DLNYLKQLWQAIEEAGKAHHYPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQVSE
FMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHVACPRCAGTGVIRGIESTALHV
LRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHY
EINRIRTDDVEGDGEPSYKRVAEPEEDESAKPFGGERAKAARPEPAVKGVRHTSPAPTAA
PGKKTSWWDSFKAWLKRIFGGEPAPAAVAPEPTEKRTANNRSQNSNRRSNSRRQNPRRNN
KHDGSKVEVREVNAEAVDSKFEENKSNESRNDERKDNRRNRNRNNRRDDRNNEHNRVEEV
VEDVNVQEVAALAEMPSENQAEQNGNKRRRNNSRNERNRHQPAENRVEDANVQADGEQVQ
VEADDNARSEEGVKNNGRQGRDRNNRQRNNRNDRRSNSKKRNIPSSAKIEQYLNITDTAD
KVLFAVAHVLGLNETGEAANATLTFESDQAEPLVIVVSEPEVTGAEPFVFAIESEDEPAV
AQTEGADAEQALLASAVSNVKEAISAVLSPNETATVAPVEIPTETVATQTKAVAEVAPVA
IVVPESLGDLIFVETDPQAVAVFAAQPQPEPVAKTRRSDVPKVEVEDVAVEMILVETRQD
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttattcaacgcaacgcaggccgaagagctgcgcgttgccattgtcgat
ggccaaaaccttttggacttggacatcgaaacgctgggcaaagaacagcgtaaaggcaat
atctacaaaggtatcattacccgcatcgagccgtcgctggaagcgtgtttcgtcgattac
ggaaccgaccgccacggctttttgccgtttaaggaagtatcgcgttcatatttccgcgac
tacgaaggcggcagggcgcgtattcaggacgtgctcaaagagggcatggaagtcattgtc
caagtcgaaaaagacgaacgcggcaacaaaggcgcggcgctgaccactttcatcagcctg
gccggccgctatttggtattgatgccgaacaacccgcgcggcggcggcgtatcccgccgt
atcgaaggcgaagagcgtcaagagttgaaagccgccatggccgaactcgacattccaaac
ggcatgagcatcattgcccgtactgccggcatcggccgcagtgcggaagagttggaatgg
gacttgaactacctcaaacaactctggcaagccattgaagaagcaggcaaagcacaccat
tacccttacctgctctttatggaaagctcactgctgattcgtgcgattcgagactatttc
cgccccgacatcggcgaaattctggtggacaatcaagaagtttacgaccaagtttccgag
ttcatgagctacgtcatgccgggtaatataggccgtctgaaactctacgaagaccacacg
ccgctgttttcccgcttccaaatcgaacaccaaatcgaaagcgcgttttcgcgcagcgtc
agcctgccttccggcggcgcgatcgtgatcgaccataccgaagccctcgtctccatcgat
gtcaactccgcacgcgccacacgcggcgcggacatcgaagacaccgccttcaaaaccaat
atggaagccgccgaagaagtcgcacgccaaatgcgcctgcgcgacttgggcggcttggtc
gtcatcgacttcatcgacatggaaaatcccaagcaccagcgcgatgtggaaaacgtcctg
cgcgacgcgctcaaaaaagaccgcgcccgcgtacagatgggcaaactctcccgtttcgga
cttttggaattgagccgccaacgcctgaaaccggctttgggcgaaagcagccacgtcgcc
tgtccgcgctgcgccggcaccggcgtgatccgcggcatcgaatccaccgccctgcacgtt
ttgcgcatggttcaggaagaagcgatgaaggacaacaccggcgaagtgcgcgcccaagtg
cccgtcgatgtcgccactttcctgctgaacgaaaaacgcgccgagctgtttgcaatggaa
gagcgtttggatgtcaacgtcgtcctgattccgaacatccacctcgaaaacccgcactac
gaaatcaaccgcatccgcaccgacgacgtagaaggagacggcgaaccgagctacaaacgc
gttgccgagccggaagaagacgaatccgccaaaccgttcggcggcgaaagagccaaagcc
gcccgtcccgaacccgccgtcaaaggcgtgcgccacaccagccccgccccgactgccgcc
cccgggaaaaaaacctcttggtgggacagcttcaaagcttggttgaaacgcattttcggc
ggcgagcctgcacctgccgcagttgctccagagcctaccgaaaaacgcacggcaaacaac
cgcagccaaaacagcaaccgccgttcaaacagccgccgtcaaaatccacgccgcaacaac
aaacacgacggcagcaaagtcgaagtgcgcgaagtgaatgccgaagctgtcgacagcaag
tttgaagaaaacaaatcaaacgaaagccgcaacgacgagcgtaaagacaatcgtcgcaac
cgcaaccgtaacaaccgccgcgatgatcgcaacaacgagcacaaccgtgttgaggaagtg
gttgaagacgtaaacgttcaagaagtggctgcactggctgagatgccgtctgaaaaccaa
gcggaacaaaacggcaataaacgccgccgcaacaacagccgtaacgagcgcaaccgtcat
caacctgcggaaaaccgtgttgaggacgcgaacgttcaagccgatggcgagcaggtgcaa
gttgaagcggacgacaatgcccgcagcgaagagggtgtgaaaaacaacggccgtcaagga
cgcgaccgcaacaaccgtcagcgcaacaaccgcaacgaccgtcgttccaacagcaaaaaa
cgcaatattccgtcttcggcaaaaatcgagcaatacctgaacattaccgatactgccgac
aaagtcctctttgccgtagcgcatgttttaggtttgaacgaaacgggtgaagctgcaaat
gcgacattgacttttgaaagcgaccaagccgagccgctggtgattgtggtatccgagcct
gaagttaccggcgcagagccattcgtatttgcgattgaaagcgaagatgagcctgccgta
gcgcaaactgaaggcgctgatgccgaacaagccctgcttgcttctgccgtcagcaacgtt
aaagaagccatttctgcagtattgtctccgaatgaaacggctactgttgcaccggttgaa
ataccaaccgaaactgttgccacacaaactaaagctgtagccgaagtagcgcctgttgca
atcgttgtgcctgagagcttgggcgatttgatcttcgttgaaaccgatccgcaagccgtt
gccgtttttgccgcgcagccacaacctgaaccggttgctaaaacacgccgttcggatgtg
cctaaagtagaagtggaagacgtagcagtcgaaatgattttggtggaaacacgccaagac
taa
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