Candidatus Nitrososphaera gargensis: Ngar_c01560
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Entry
Ngar_c01560 CDS
T02305
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit A
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ngar_c01560 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nga03021
]
Ngar_c01560 (rpoA)
Enzymes [BR:
nga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ngar_c01560 (rpoA)
Transcription machinery [BR:
nga03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Ngar_c01560 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
NAC
Motif
Other DBs
NCBI-ProteinID:
AFU57105
UniProt:
K0IC33
LinkDB
All DBs
Position
122427..126248
Genome browser
AA seq
1273 aa
AA seq
DB search
MEESAKILGGIKFSVWSPTEVRKFSVAEITAPETYDEDGMPVQGGLMDNRLGTLEPGQKC
ATCGNTSAKCPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIKLEPEELTHYKSIR
DTKAAYAVITLENIKDEIIERAKKVKVCPHCGKEQYDLIFTKPTIFVEKTDAGENRLLPI
TIRERLSHIPDDDLTLLGYDPRTARPEWFVLQVLPVPPVTVRPSIILETGIRSEDDLTHK
LVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGRPLKTL
TQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNV
ERLKELVMNGPNTYPGANYIIRPDGVKIRLDYVTDRKAIADSLAPGYIVERHLADGDIVI
FNRQPSLHRMSIMAHSVKVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSEEARAEATL
LMRVQDQLISPRYGGPIIGGIRDFITGAFMLTRDGTTLTKDEFANLAMIGGYEGPLPEPA
ITKDGQRLYSGRQLFSLFLPKDFNFIITSKWNKAAKGEGKDVVIKNGELISGVIDKASIG
AEEPDSVLHRIAKDYGTNAARKFLDSILTMLKTYITHRGFTYGYSDLWLSPETRQEINDI
IQKTYEKVYELIQQYNDGTLPLTRGLAAEEALELYVVNELSRARDRAGRTADRAFPDENS
GVIMASTGARGSTLNIGQMTAALGQQSIRGKRIQKGYHNRALSHFKPNDANPDAKGFVKS
NYRDGLSPLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHLKIEYDQTVRDPHGN
IVQYLYGEDGIDPAKSDHGEAVNISRLIEAESIVDEGRKATEDVIKSIIAKYAENLNPRM
KANLEKALLENRLSKEGVEKVMKKVLDLIDRALAEPGEAVGVVTAQSIGEPGTQMTLRTF
HFAGVKERNVTLGLPRLIELVDARKKPVTPTMDIYLDEEHRVSREKALEVAREILFTRIG
DLIERSETDYSGVLTFHLSEAKLAERGCTFADVQEVLEGSKKKYTVKPNENKLSIKITVP
DEPDAQTLLTLKSKLLNTRVKGVPDIERVTIVKQDEEWVIQTAGSNLAKVVAVDGVDLTR
VTTNNVYEIWQTLGIEAARTALIKEITNTLEEQGLEVDTRHIMLVADLMTSKGYLQQIGR
HGIAGTKTSVLARAAFEITVPTIARASLEGQIETLKGVTENVIVGATVPVGTGMVDLYMK
VKDSNNESAGKSD
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctgcaaaaattttgggcggaataaagttcagcgtatggtcgcctactgaa
gtgagaaagttctctgtcgccgagataacggccccagagacgtacgatgaagatggtatg
ccggtgcagggaggccttatggacaacaggctaggaactctggagccgggtcaaaagtgc
gccacctgtggcaacacttctgcaaaatgccctggccactttggacacatcgagcttgcc
gagccggtgctccacatcgcatttgtagacgacatccacaagcttctgctgatatcgtgc
aggtcgtgcaacaggatcaagctcgagccggaagagctcacccactacaagtcgatccgt
gacacaaaggcagcctacgcggtcattacgcttgaaaacatcaaggatgagataatcgag
cgggccaagaaggtcaaggtctgcccgcactgcggcaaggagcagtacgacctgatattc
acaaagccaactatatttgtagaaaagacggacgccggcgaaaacaggctgctgccaatc
acgatacgcgaaagactgagccacatcccagacgatgacctgactctgctaggctacgac
ccccggactgcaaggccagaatggttcgtgctccaagtgctgccagtgccgccggtgacg
gtcaggccgtcaatcatacttgaaacaggcatcaggtcggaggacgaccttacccacaaa
ctcgttgacatcatcagggtgaatcagcgcctcaaggagagcaaggaggcaggaacccct
ccgctcatcgtgcaggacctcgtcgatctgctgcagtaccatgtcacgacgtactttgac
aacgaagtgtctggcatcccgcaggcccaccacaggtcgggcaggccgctcaagaccctg
acccagaggctcaagggcaaggagggaaggttcagaggctcgctttcaggcaagcgcgtc
gacttttcaagcaggacggtgatctcgccggatcccaaccttacgatcgcggacgttggc
gtgccgaccgatgttgccaaaaagctcacgatacccgagaccgtttcgcagtggaacgta
gaaagactcaaggagctggtgatgaatggccccaacacatacccgggcgcaaattacatc
ataaggccagacggggtcaagataaggctggattatgttaccgatagaaaggcaatagcc
gactcgcttgctccgggatacatcgtagagcgccaccttgcagacggcgacattgtgatc
tttaacaggcagccgtcgctccacaggatgtccataatggcgcacagcgtcaaggtgctc
ccctacaggacgttccgcctgcaccctgcagtctgcccgccctacaacgccgactttgac
ggggacgaaatgaacctgcacgtaccgcagagcgaagaggcgagggccgaagccaccctt
ctcatgagggtgcaggaccagctgatatcgccaaggtatggcggacccatcattggaggc
atcagggactttattaccggtgcattcatgctgacccgcgacggaaccacgctgacaaag
gacgagtttgcaaaccttgcgatgataggcggctacgaagggccgctgccagagcctgca
ataacaaaggacggccaaaggctctactcgggcaggcagctcttctcgctgttcctgcca
aaggactttaactttatcatcacatcaaaatggaacaaggccgcaaagggcgagggcaag
gatgtcgtcataaagaacggcgagctcataagcggcgtgatcgacaaggcgtcgatcggc
gcagaagagccggacagcgtgctccacaggatcgccaaggactatggcacaaacgctgca
agaaagttcctcgattcgatccttaccatgctcaagacgtacattacccacaggggattc
acatatggctactctgacctgtggctctcgccagaaacaagacaggagataaatgacatt
atccaaaagacctacgaaaaggtctatgagctgatacagcagtataacgacggaacgctg
ccgctcacaaggggtcttgctgctgaagaggcacttgaactgtatgtggtaaacgagctg
tcacgcgcacgcgaccgcgcgggcaggacggccgacagggcgttccccgacgagaactcg
ggcgtcataatggcgtcaacaggcgcaaggggctcgaccctcaacataggccaaatgact
gcggccctcggccagcagtcgatcaggggcaagaggatccaaaagggctaccacaacagg
gcactgtcgcacttcaagcccaacgacgccaacccagacgcaaagggctttgtcaagtca
aactaccgcgacggcctgtcgccgcttgaattctttttccacgcaatgggcggaagagaa
ggcttggttgacactgcagtcaggacgcagcaatctggctacatgcagagaaggctcatc
aacgcgctggagcacttgaagattgagtacgaccagactgtgcgcgatccgcacggcaac
atcgtccagtacctgtatggcgaggacggaattgaccctgccaagagcgaccacggcgaa
gccgtcaacatttcaaggctcattgaagctgaatcaatagtagacgagggaaggaaggcg
accgaggatgtcatcaagagcatcattgccaagtatgccgagaacctcaacccgaggatg
aaggctaacttggaaaaggcgctccttgaaaacaggctgagcaaggaaggagttgaaaaa
gtcatgaagaaggtgctcgacctgatcgacagggcgcttgccgagccgggagaggcagtc
ggagtcgtcaccgcgcagtcgataggcgagccgggaacccagatgaccctcaggacattc
cactttgctggcgtcaaggagagaaacgtgacgcttggccttccgaggctcatcgagctc
gtggacgcgcgcaaaaagccggtgacgcccacgatggacatttacctcgacgaggagcac
agggtgtccagagaaaaggcgcttgaagtcgcaagagagatactgttcacccggataggg
gaccttatcgagaggtcggagactgattatagcggcgtgctgacgttccatctgtcagag
gcgaaactggcagagcggggatgcacctttgccgatgtgcaggaagtccttgaaggatca
aagaagaaatacacagtcaagccaaacgagaacaagctctcgatcaagataacggttcct
gacgagccggatgcgcagactctgctgacgctcaagagcaagctgctcaacactagagta
aagggcgtgccggacattgagcgcgttacaatcgtaaagcaggacgaagagtgggtgatc
cagactgcaggctctaaccttgcaaaggtggtggcagtcgacggcgtcgacctcacaagg
gtcaccacgaacaatgtgtatgagatatggcagacgcttggcatcgaagccgcaagaaca
gcgctaatcaaagagatcacaaacacacttgaagaacagggtcttgaagtggacacgcgc
cacatcatgctggtcgccgacctgatgacgtccaagggctacctccagcagataggcagg
catggcatcgccggaacaaagacatcggtgcttgcaagggccgcgttcgagatcacagtc
ccgacaattgcaagagcctcgcttgaaggccagattgagacgctgaaaggagtaacagaa
aacgttatagtgggtgccactgtacctgtcggcactggaatggtagacctctacatgaag
gtgaaggatagtaacaatgaaagtgctggaaaaagtgattag
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