Candidatus Nitrososphaera gargensis: Ngar_c02220
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Entry
Ngar_c02220 CDS
T02305
Symbol
tfb1
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Ngar_c02220 (tfb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nga03021
]
Ngar_c02220 (tfb1)
Transcription machinery [BR:
nga03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Ngar_c02220 (tfb1)
Prokaryotic type
Archaeal type
TFB
Ngar_c02220 (tfb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
DUF6398
Zn_Ribbon_TF
HTH_AsnC-type
Sigma70_r4
HTH_11
wHTH-PRTase_assc
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-ProteinID:
AFU57170
UniProt:
K0ICB0
LinkDB
All DBs
Position
complement(175817..176749)
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AA seq
310 aa
AA seq
DB search
MVVTDPDTGELIRKDTGEVISDNALSQEKEWRAFGSEGDADRARTGAPVSLAFHDMGLST
VIGKESTDASGNQIDSATQMRMGRLRMWHSISHSHSPKERSLQQAFTMLSKIKDRLGLPD
YVIEKAAYVYRKAQERGLIRGDSIGSVLAASIYTAVRQSGVLRTLDEISASIDVKPKQAG
RSYRRIVTELDIKVPMIDHARYIIRIANRLELDERTKRKALELIEQARKKDLLAGRDPIG
MAASILYLVNLEEKSYRTQADIAKAAGVTEVTVRNRSKELRNRLDMDSNSRSTLRGQKFP
LLNESNTRKD
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
ttggtggttactgatccagatacaggcgaattgatacgcaaggatactggcgaggttatt
tctgataacgcattatctcaagaaaaagaatggcgcgcatttgggtccgagggggacgcg
gacagggcacgaacaggcgctcctgtatccttggcctttcacgacatggggctctctaca
gtcataggcaaagagagcactgacgcatccggcaaccagatcgactctgcgacccagatg
aggatgggaaggctcaggatgtggcatagcataagccatagccattcgccaaaggagaga
agcctgcagcaggcttttacgatgctctcaaagatcaaggacaggctaggcctgccagat
tacgtgattgaaaaggcagcatatgtgtatcgaaaagctcaggaaagaggtcttatccgg
ggcgacagcataggctcggttctggccgcttcgatatacactgcagtcaggcagtcagga
gtgctaaggacccttgatgaaatttcggcaagtattgacgtcaagcccaagcaggctggc
aggtcctaccggcgtattgtaacagagcttgacatcaaggtgccgatgatagaccacgca
aggtacatcatcagaatagcgaacaggctggagcttgacgaaaggacaaagcgcaaagcc
ctcgagcttatcgagcaggccaggaaaaaggaccttctggcaggcagggacccaataggc
atggcggcatctattctgtaccttgtaaacttggaggaaaagtcttacagaacgcaggca
gacattgcaaaggcagcaggagtcacagaagtgactgtaaggaacaggtcaaaagaactc
aggaacagacttgacatggatagcaacagccgatctaccctcagaggacagaaatttcct
ctgctcaatgagagcaatactcgtaaggactag
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