Candidatus Nitrososphaera gargensis: Ngar_c02250
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Entry
Ngar_c02250 CDS
T02305
Symbol
cdc48
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Ngar_c02250 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nga03019
]
Ngar_c02250 (cdc48)
03009 Ribosome biogenesis [BR:
nga03009
]
Ngar_c02250 (cdc48)
04131 Membrane trafficking [BR:
nga04131
]
Ngar_c02250 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nga04147
]
Ngar_c02250 (cdc48)
Messenger RNA biogenesis [BR:
nga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Ngar_c02250 (cdc48)
Ribosome biogenesis [BR:
nga03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Ngar_c02250 (cdc48)
Membrane trafficking [BR:
nga04131
]
SNARE
SNARE associated proteins
Others
Ngar_c02250 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Ngar_c02250 (cdc48)
Exosome [BR:
nga04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Ngar_c02250 (cdc48)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
RuvB_N
AAA_16
AAA_2
AAA_14
CDC48_2
TIP49
AAA_5
AAA_22
AAA_33
nSTAND_NTPase5
AAA_28
Sigma54_activat
IstB_IS21
RNA_helicase
nSTAND3
AAA_7
ABC_tran
Mg_chelatase
TsaE
ATPase
PhoH
NPHP3_N
AAA_18
Zeta_toxin
DUF815
AAA_24
NACHT
Parvo_NS1
Cytidylate_kin
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
AFU57173
UniProt:
K0IEI3
LinkDB
All DBs
Position
complement(179115..181268)
Genome browser
AA seq
717 aa
AA seq
DB search
MEAYARDVGKGIARIDYDTMASLGVAAGDVLEIKGSRRTVAKCLPLYPSDEGKNSIRIDG
LMRNNAGVGIGDMANAKKVKAVPAEKILVSPLEAMPPIDERYISDSLENTPLVKGDNIML
PYFGGRLTFQVVGVTPPADAVLVTSKTLFTITEKDADLRGMPHVSYEDIGGLKDELQKVR
EMIELPLRHPEIFEKLGIEAPKGVLLFGPPGTGKTLLAKAVASESNAHFITISGPEIMSK
FYGESEARLREIFKEAKDKAPSIIFIDEIDSIAPKREEVTGEVERRVVSQMLSLMDGLEG
RGKVIVIAATNRQNALDPALRRPGRFDREIEIKVPDKHGRLEILQIHSRNMPLDTDVDQP
RIAAVSHGFVGADLEYLCKEAAMKCLRRLLPELNMEEDKLPPATLDKLIITQNDFDQAIR
DVTPSAMREVFLESPDVKWQDIGGLDGVKRELQEAVEWPLRYPDLYAKLGHKVPKGILLH
GPSGTGKTLLAKAVATESEANFISVKGPELVSKWIGESERGIREVFRRARQAAPCVIFLD
EIDSIAPTRGGGMEGGGGGSGTERIVSQILTEIDGISELHGVVVLGATNRPDMVDPALLR
PGRFDRIILVPNPDSKTRAKILEIHANGKPIGQDVNIQKIAEAMTEGFSGADTAAVVNTA
ISLVLHEYLAKYPTPEEAAKHATEAHIMLRHFEQAVKKIKTQRDTKPREAMALSLYK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
ttggaagcctatgcaagagatgtaggcaaaggcatagccaggattgattatgacactatg
gcatctttgggagtagcagcgggtgacgttctcgaaataaagggcagccgcaggactgtt
gccaaatgtttaccactttatccttcagatgagggaaaaaacagcatcaggatagatggg
ctgatgagaaataatgcaggcgtcgggataggagacatggcaaatgcaaagaaagtgaaa
gcagtcccggcagagaaaattttagtatctccactcgaagcgatgccgcctatagatgaa
cgatatatttctgattctcttgagaacactccacttgtcaaaggcgacaatatcatgttg
ccttattttggcggcaggcttacattccaagtagttggtgtaaccccgcccgcggatgcg
gtacttgtgacaagcaagactttattcaccattactgaaaaagatgcagatttgcgaggt
atgccccatgtgtcatacgaagacattgggggcttgaaggatgaactgcaaaaggtcaga
gaaatgatagagcttcctctaagacatccagagatatttgaaaaactgggaattgaagct
ccaaagggagtgctgctgttcgggcctccaggaactggcaagaccctgcttgctaaggca
gtcgcaagcgagagcaacgcgcattttattactatctccggcccggagatcatgagcaag
ttttacggagaatcagaagcgcgcttgcgtgaaatattcaaagaggcaaaagacaaggct
ccatccataatatttatcgacgaaattgattccatcgcgccaaagagagaagaagtgaca
ggcgaagttgaaaggagagtagtgtcgcaaatgttgtcattaatggatggtctcgagggc
agaggaaaagtcatcgtaattgcagctaccaacagacaaaatgcccttgacccagccttg
agaagaccgggaaggtttgaccgggaaatcgagatcaaggtgcctgacaaacatggacgg
ctggaaatccttcagattcattcccgcaatatgccgcttgacaccgacgttgaccagccc
agaatagcagcggtttcccatggttttgttggtgctgatctggaatatctatgcaaggaa
gctgcaatgaagtgccttcgcaggttgctgcccgagctgaacatggaagaggacaagttg
ccaccagcaacacttgacaagctcataataacccaaaatgattttgaccaggccataaga
gatgtcacaccctctgcaatgagagaagtcttccttgaatctccagacgtaaaatggcaa
gatattggaggtcttgatggcgtaaaacgtgaattgcaagaagctgtcgagtggccactc
agataccccgatctttatgcaaagctaggtcataaagttccaaaaggcattttgttgcat
ggaccgtctgggactggcaaaactctcttggcaaaggcagtggcgaccgaatcggaagcc
aactttatcagcgtcaagggccctgaactggtatccaagtggattggcgagtcagagcgt
ggaataagagaggtattcagaagggcaagacaggcggcgccctgtgtcatattccttgac
gaaattgactcgattgctccaacaagaggcgggggaatggaaggtgggggagggggaagt
ggaactgagagaatagtttctcagattctaacagaaatagacggcatcagcgaattgcat
ggagttgtagtcttgggcgcaactaacagacctgacatggttgaccctgcgcttttgagg
cccggcagatttgacagaataatacttgttccgaacccagatagcaagacaagggccaag
atacttgagattcatgccaatggaaagcccattggtcaggatgtgaacattcagaaaata
gcagaagcaatgacagaaggattcagcggggcagacaccgccgcagtagtaaatactgca
atatcgctcgtcctacatgaatatttggcaaaatatccaacgccagaagaggcggcaaag
catgctacagaagcgcacataatgttgcgccactttgaacaggctgtcaagaagataaag
acacagagggatacaaagccaagggaagcaatggcgttatcgctttacaaataa
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