Candidatus Nitrososphaera gargensis: Ngar_c04520
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Entry
Ngar_c04520 CDS
T02305
Name
(GenBank) uncharacterized protein family UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nga
Candidatus Nitrososphaera gargensis
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nga03016
]
Ngar_c04520
Enzymes [BR:
nga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Ngar_c04520
Transfer RNA biogenesis [BR:
nga03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Ngar_c04520
Prokaryotic type
tRNA splicing ligases
Ngar_c04520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF993
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
AFU57398
UniProt:
K0IF19
LinkDB
All DBs
Position
338624..340099
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AA seq
491 aa
AA seq
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MSELVTRSGNHRVRKVSDLEYRIDPNPDRGMKVPVTIYANDLLISKMVTDRTIDQAANVA
TLPGVKKHVVVLPDGHEGYGFPVGGVAATDIEEGVISPGGVGYDINCGVRLVRTNLTESD
LRPRLKDLVNELFKSIPSGVGSEGAVRLTKAELDELLVEGVRWAVRHGYGTEDDAEVCEE
SGMMAGADPASVSDTARKRGAPQLGSLGSGNHFLEVQKVDKIFDERAAKAMGLDQVGQLT
VLIHCGSRGFGHQICTDYLRVSESALRKYGLTLADRELACVPNNSKEGEDYRKAMYSALN
FAWANRQMITHWTRKTFERVFKAGEGGLDMDLVYDVAHNIAKVERYKVDGEGTRDVVVHR
KGATRAFPAGMEQVPGKYRGIGQPVIIPGSMGTASWILLGNKKSLDLSFGSTAHGAGRTM
SRSAAKRSYTAEGVKSGLESKGIYVKALTREGVVEETPDAYKDVDAVANVSHSLGIATKV
VRLVPIGVIKG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgagcttgtcacaaggagcggcaaccaccgggtcaggaaggtaagcgatctagag
taccgcatcgacccaaaccctgacaggggcatgaaggtcccagtcacgatctatgcaaac
gacttgttgatatcaaaaatggtaactgacaggacaatcgaccaggcggcaaacgtcgca
acgctgcccggcgttaaaaagcatgtagtcgtgctgccagacggccacgaaggctacggc
tttcctgtaggcggggtggccgcgactgacatcgaggaaggagtcataagccccggcggc
gtaggctatgacatcaactgcggcgtcaggcttgtcaggaccaacctgacagaaagcgat
ctccggccgcggctaaaagatctcgttaacgagcttttcaagtcaatcccctccggtgtg
gggagcgaaggcgcagtccgcctgacgaaagccgagctggacgagcttctagttgaaggc
gtaagatgggctgtccggcatggctacgggacagaggacgatgccgaggtatgcgaagag
agcggcatgatggccggcgcagatcctgcaagcgtttcagacactgcaagaaagagggga
gcgccccagttagggtccctgggctctggcaaccactttctcgaagtgcaaaaggtggac
aagatcttcgacgagcgagcggccaaggcgatgggacttgatcaagttggacagctgacc
gtgctcatacactgcggctcgcgcggctttggacaccagatatgcacagattacctgcgc
gtttctgaatctgcactgcgcaaatacggactgacccttgcagacagggagctagcgtgc
gtcccaaacaactcgaaagagggcgaggactaccgcaaagcaatgtactctgctcttaac
tttgcgtgggcaaacaggcaaatgatcacccactggacccgtaagacattcgagcgcgtc
tttaaagccggcgagggcggccttgacatggatctcgtttacgatgttgcccacaacatc
gccaaggtagagcgctacaaggtggacggcgaaggcacccgagacgtggtggtgcataga
aaaggcgcgacaagggcgttccctgcaggcatggagcaggtgccgggcaaataccgagga
ataggccagcctgttataatccccggctcgatgggaaccgccagctggatcttgcttgga
aacaaaaagtcgcttgaccttagctttggctctaccgcgcacggagccggcaggactatg
tcaaggtctgcggcaaagcgcagctacactgcagaaggagtaaagagcgggctagaatca
aagggcatctatgtcaaggcgctgacaagggaaggtgtggtcgaagagacgcccgatgcg
tacaaggacgttgacgctgtcgccaacgtatcgcactcgcttggcatagctaccaaggtc
gtgaggctcgtgccgataggagtgataaagggctaa
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