Candidatus Nitrososphaera gargensis: Ngar_c12900
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Entry
Ngar_c12900 CDS
T02305
Name
(GenBank) putative phosphoesterase, DHHA1
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03410
Base excision repair
nga03430
Mismatch repair
nga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ngar_c12900
03430 Mismatch repair
Ngar_c12900
03440 Homologous recombination
Ngar_c12900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nga03400
]
Ngar_c12900
DNA repair and recombination proteins [BR:
nga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ngar_c12900
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ngar_c12900
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ngar_c12900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RICTOR_V
TMEM151
TfoX_C
Motif
Other DBs
NCBI-ProteinID:
AFU58230
UniProt:
K0IEP8
LinkDB
All DBs
Position
complement(1006217..1007197)
Genome browser
AA seq
326 aa
AA seq
DB search
MSSVCISHKEDADGLCSATLIKVAFDVSKVILVDYASLISKLEKVAASDGKIEQLFICDL
GLSKKNEQKFVELLGNIASSGAEVTYIDHHDISKEIMQALKKAGVTLIHTIEECTSMQVY
AKYRKKLPEHAAFFAAMGALTDYMENKPVASTIVPRFDRQFLMLESTVLSYMISASQHDD
DFLVKIVDTLAKMKYPHDIKGGFETAEKYAKKVANAVESIQESVVKLDNIAHAPSTVELS
SSMVVNFVLGSSGKPAAMVYKFKDDIKSYVVSIRGSAGCKVHLGRLTNEIASELGGSGGG
HDRACGAVIPKDKLEEFIKTLDSRIA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgtttgcatatctcacaaggaagatgcagatgggctctgctctgccactctg
ataaaggtagcgtttgacgtttcaaaagtaatccttgtggattatgctagccttatctcc
aagctggaaaaggtcgcggcttctgacggcaagatcgagcagctgttcatatgcgacctt
ggactgtcgaaaaagaatgagcagaaatttgtcgagctgcttggcaatatagcgtccagt
ggggccgaagtgacctacatcgatcatcatgacatcagcaaggagataatgcaggcgctc
aagaaggctggcgtgaccctcattcatactattgaagagtgcacaagtatgcaggtctat
gcgaaatacaggaaaaaactgcccgagcacgcagcgtttttcgcggcgatgggcgcgctg
accgactatatggaaaacaagcctgttgcgtctacgattgtgcccagatttgacaggcaa
ttccttatgcttgaatcgaccgtattatcgtacatgatttccgcaagccagcacgacgac
gactttctggtgaaaatagtcgacacgcttgccaagatgaaatatccccacgacatcaag
ggcggctttgagactgccgagaaatatgccaaaaaggtggcaaacgctgtcgaatcgata
caagaatctgtggtcaagctcgacaatatcgctcacgcgcctagcacggtcgagctatcg
tcaagcatggtggtcaactttgtgcttggctcgtccggcaagcccgccgcgatggtctat
aagttcaaggacgacatcaagtcatacgtcgtttcaatacgcggatcggccggctgcaag
gtgcacctcggccggctcacaaacgaaatagcgtcagagcttggaggtagcgggggcggg
cacgatagggcgtgcggcgcagtgatcccaaaggacaagcttgaggaattcatcaagacc
cttgatagcaggatagcctag
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