Candidatus Nitrososphaera gargensis: Ngar_c18430
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Entry
Ngar_c18430 CDS
T02305
Symbol
rpoE``
Name
(GenBank) DNA-directed RNA polymerase, subunit E``
KO
K15171
transcription elongation factor SPT4
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Ngar_c18430 (rpoE``)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nga03021
]
Ngar_c18430 (rpoE``)
03019 Messenger RNA biogenesis [BR:
nga03019
]
Ngar_c18430 (rpoE``)
Transcription machinery [BR:
nga03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
Ngar_c18430 (rpoE``)
RNA polymerase I system
Ngar_c18430 (rpoE``)
Messenger RNA biogenesis [BR:
nga03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
Ngar_c18430 (rpoE``)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
EGF_LMN_ATRN
DZR
Zn_Ribbon_TF
TackOD1
zf-RING_4
Nop10p
Motif
Other DBs
NCBI-ProteinID:
AFU58776
UniProt:
K0IBW1
LinkDB
All DBs
Position
1431846..1432034
Genome browser
AA seq
62 aa
AA seq
DB search
MAKEKACRRCKVITTGKVCPNCKSTDLSPDWSGIILVFDPAKSQVARTLDITTPNKYALK
VS
NT seq
189 nt
NT seq
+upstream
nt +downstream
nt
ttggccaaggaaaaggcttgccgcaggtgcaaagtgataaccacgggcaaggtgtgcccc
aactgcaagtcaacagacctgagccctgactggtccggcatcatactggttttcgatcct
gccaagtcccaggttgctaggacgcttgacatcaccacccccaacaaatatgccttgaag
gtctcgtag
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