Candidatus Nitrososphaera gargensis: Ngar_c23850
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Entry
Ngar_c23850 CDS
T02305
Symbol
ecx1
Name
(GenBank) putative exosome complex exonuclease
KO
K12589
exosome complex component RRP42
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ngar_c23850 (ecx1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nga03019
]
Ngar_c23850 (ecx1)
Messenger RNA biogenesis [BR:
nga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Ngar_c23850 (ecx1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Ngar_c23850 (ecx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AFU59310
UniProt:
K0IHB2
LinkDB
All DBs
Position
complement(1855307..1856131)
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AA seq
274 aa
AA seq
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MSSSRRSTIIVEHLRRQQMWDSLARGKRLDGRDFNEQRPLEIEVDVIKKANGSARVKLGD
SEVIAGIKVETGEPFEGLEEKGALIVTAEVLPTASPYIEPGPPDEEVVELARVVDRGVRE
SEMIDLDQLVLVPGKIVYTIFVDCSVINADGNLFDATSYAVVASLLTAKLPILEMKDDKV
VDTGQTRPMPVTTIPVSITAARIGDYVVIDPTAEEEGCMDARITITTNDEGFCAIQKGHT
GAFTVDQLKKAAETARIKGEEVRARLKELAKNNG
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtcaaggagatctacgataatagtagaacacctgcgcaggcagcagatgtgg
gactcgcttgcccgtggcaagaggcttgatggcagggactttaacgagcagaggccgctt
gaaatcgaggttgatgtgataaagaaggccaacggctctgcaagggttaagcttggcgac
tcggaagttattgcaggcatcaaggtagagacaggcgagccgtttgaagggctcgaagaa
aaaggcgctctcattgtgacagccgaagtgctgccgaccgcgtctccatacatcgagccg
ggaccgccagatgaagaggtggtcgagctggcaagagtagtcgacaggggtgtcagagaa
tcagaaatgatagaccttgaccagctggtgctagtgccaggtaagattgtctacacgata
ttcgtagactgtagtgtgataaacgctgacgggaacctgttcgacgcgacatcatatgct
gtcgtggcatcgctcctgactgccaaactgccgatacttgaaatgaaggacgataaggtg
gtcgacacgggccagacgaggccgatgccggtgactaccataccggtttcgataaccgcg
gcaaggatcggcgactatgtggtgatagaccccacggcggaagaagagggctgcatggac
gcaaggataacgataactaccaacgacgaaggcttttgtgcgatccagaaggggcacact
ggcgcattcacagtcgaccagctaaagaaggcagcagagacagcaagaattaaaggagag
gaagtacgggcaagactaaaggagctggcaaagaataatggttaa
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