Candidatus Nitrososphaera gargensis: Ngar_c26260
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Entry
Ngar_c26260 CDS
T02305
Symbol
truD
Name
(GenBank) putative tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
nga
Candidatus Nitrososphaera gargensis
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nga03016
]
Ngar_c26260 (truD)
Enzymes [BR:
nga01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Ngar_c26260 (truD)
Transfer RNA biogenesis [BR:
nga03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Ngar_c26260 (truD)
Prokaryotic type
Ngar_c26260 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
NrtR_WHD
Motif
Other DBs
NCBI-ProteinID:
AFU59548
UniProt:
K0IJZ5
LinkDB
All DBs
Position
2037393..2038655
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AA seq
420 aa
AA seq
DB search
MTLYVSKIDRLAGIECYCTSFAGTGGSIKQRSEGFRVSELVDELLVGNISLTFDNRHRYP
LYILEKHDIDSNHALFEIERECRMRLRVMGIKDAKAVTTQYASADRVMRNPPGELKTKHT
RLTLEGFTRRPLGKEFLAGNKFEITIHRPRSHDLSGLLPEIDKVGNFYGLQRFGSERLVT
HLVGREIVKRNFRRAVELLLSYTTEYDTPASKEIRSKSADPGNYRQVLRILPRGMDIERQ
VLTALVAGKDAVSALRTVPITIRRLFVQAYQAYIFNKCLSTAVINGEDLLQPAAGDLCFE
MEGPATFGRIIKYDHASKAKKMVPAIRMAGYTFQPGKGRFENITKAILQEEGVTAKDFYV
KEMQELSHQGGFRQAPLWCMDFSYSKNPQLIVSFKLPKGSYATTLLREIIKPQDPIRSGF
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttatgtctccaagatcgacaggcttgcaggaatagaatgctactgtacaagc
tttgccggcacgggcgggtctatcaagcaaaggagcgagggctttagagtttccgagctg
gtagacgagttgcttgtgggcaacatatcgctaacatttgacaaccggcaccgctacccc
ctctacattcttgaaaagcacgatatcgactcaaaccacgcgctatttgagatcgagcgc
gaatgcaggatgaggcttagggtgatggggataaaggacgccaaggccgtgacgacgcag
tatgccagcgcggacagagtgatgagaaacccgccgggagaattaaagaccaagcacacc
cggctcacactagaaggctttacccggcggccgcttggcaaagagttccttgcaggcaac
aagtttgaaataacgatccacaggcctcgctcgcatgacctgtcaggcctgctcccggaa
atagacaaggtaggtaacttttacggactccaacgctttggaagcgaaaggctggtgacg
caccttgtgggaagggaaattgtcaagcgcaacttcaggcgcgcagtagagctcctgctg
tcgtataccacggaatacgatactcctgcaagcaaggagatccgcagcaagagtgctgac
ccgggcaactaccggcaagtgctcagaatactgccaaggggtatggacatcgagcggcag
gtgctgacggcgcttgtcgccggcaaggacgcagtttcggctctgcgtacagtgcctatt
acgatccgccggctgttcgtgcaggcgtaccaggcctacatctttaacaagtgcttgagc
acggctgtcatcaacggagaggatctgctccagccggccgctggcgacctctgctttgag
atggaggggccggccacgtttggcaggataatcaagtacgaccatgcttcaaaggctaaa
aaaatggtgccggccataaggatggcaggctatacattccagcccggcaagggcaggttt
gaaaatatcaccaaggcaatcctgcaggaggagggcgtgactgcaaaggacttttacgtc
aaggagatgcaggagctcagccaccagggaggctttaggcaggcgccgctctggtgcatg
gacttttcctacagcaaaaaccctcaactgatagtatcattcaagcttccaaagggatcg
tacgcgaccacgctcttacgcgagataatcaaaccacaagacccgatcaggagcggtttt
tag
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