Candidatus Nitrososphaera gargensis: Ngar_c30820
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Entry
Ngar_c30820 CDS
T02305
Name
(GenBank) putative RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ngar_c30820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nga03019
]
Ngar_c30820
Messenger RNA biogenesis [BR:
nga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Ngar_c30820
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Ngar_c30820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Motif
Other DBs
NCBI-ProteinID:
AFU59998
UniProt:
K0IKU3
LinkDB
All DBs
Position
2413051..2413653
Genome browser
AA seq
200 aa
AA seq
DB search
MSREDNKLTLPGERVASIEEFEGGKNTYMTPDGTVRSATVGTTVYDLKRRIVKIEQKNSP
MLPKVGDIIVGYVEMMFSSMVSIKVLYINDKWSEAGFSAIASARIGSRADVERRGDRRAT
FHNGDIVRGRVISLLNSTIHLTLTEKEYGLLYALCFICGGDTVRTSESTIKCVECGAFEN
RKLAHDYGKESFRLVLKAGK
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgagtagagaagacaataagctgacgctgccaggtgagcgcgtcgcgtcaattgaggaa
tttgagggaggcaagaacacctacatgactcccgacgggacggtgcgctctgcaacagtc
ggcacaacagtttacgatctaaaacgcaggattgtcaagattgagcaaaagaactccccg
atgctccccaaggtgggcgacatcatcgtgggatacgtcgagatgatgttcagcagcatg
gtatcgatcaaagtgttgtacataaacgacaagtggtccgaggcgggtttctccgcgatc
gcgtctgcaaggataggaagccgcgccgatgtcgagagaagaggcgacaggcgcgcgaca
ttccacaacggcgacattgtgaggggcagggtgatcagcctgctcaattccacgatacac
ctcacgcttacagaaaaagagtacggattgctgtatgcactgtgcttcatatgcggcggc
gacactgtccgcaccagcgagagcacgataaaatgcgtcgagtgcggcgcttttgagaac
cgcaagcttgcgcacgattacggcaaagagtcgttccggctggtactcaaagcaggcaag
taa
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