Candidatus Nitrososphaera gargensis: Ngar_c32070
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Entry
Ngar_c32070 CDS
T02305
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nga
Candidatus Nitrososphaera gargensis
Pathway
nga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ngar_c32070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nga03019
]
Ngar_c32070
03009 Ribosome biogenesis [BR:
nga03009
]
Ngar_c32070
Enzymes [BR:
nga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ngar_c32070
Messenger RNA biogenesis [BR:
nga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ngar_c32070
Ribosome biogenesis [BR:
nga03009
]
Prokaryotic type
rRNA helicases
Ngar_c32070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Helicase_RecD
CMS1
Utp25_C
AAA_30
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFU60123
UniProt:
K0IL30
LinkDB
All DBs
Position
2516816..2518180
Genome browser
AA seq
454 aa
AA seq
DB search
MTKTFEELGLSAQLTRALSENGFEAPFPIQEAAIPLVLEGKDVVGQAHTGTGKTAAFGLP
ILQKIKPDGPLQALILAPTRELAVQVTTEIKRFAKYTGVRTVAIYGGQSINVQLDKLKQG
VQIVVATPGRLIDHIKQGSIILDDVKFVVLDEADRMLDMGFIDDIKFILFYVNEDRQTCL
FSATMPPEILRLAEEYMKRDEIEHVRLNEEEITLDTIDQSYLVVEEREKFKHLCNFIRQN
KDSKAQTIVFAATKQRADRIAYNLRREGFSAVTIHGDLSQRQRDNAMHKFRKGTEDILVA
TDIAARGIDVPAVGHVINYDVPDDPNVYFHRIGRTARAGAEGKAISLVSNDRIADFDRIL
AQTQLPIRKLNDEMGIVVPVVAQRQPQSYGGGGGYRRRGGYGGGGDRGYRGGGRRYGSDG
YGGYRRGGGHRGYGGSGSGYRGGGGRRYGNNNYY
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaacatttgaagagttgggattgagtgcacaactaacaagagcactctccgaa
aatggatttgaggcgccgttccctatacaagaggcagctataccgcttgttttggaaggt
aaagatgtcgtaggacaggcgcacacaggaaccggcaagacggcggcttttggcctgccg
atattgcaaaagatcaagcctgacggtccgctgcaggcattgatacttgccccgacaagg
gaacttgcggtgcaggtcacgaccgagatcaaacggttcgcaaagtacacaggagtaagg
acagtcgccatctatggcggccagagcatcaacgtgcagcttgacaagctcaagcagggc
gtacagatagtagttgcgacgcccggcaggcttatcgaccacatcaagcagggctcgata
atacttgacgatgtcaagttcgtggtgctcgacgaggcagacaggatgttggacatgggc
tttatcgacgacatcaaattcatcctgttctacgtgaacgaagacaggcagacttgcttg
ttctctgcgacaatgcccccggagatcctgaggctggcagaggagtacatgaagcgcgac
gaaatcgagcacgtgaggctcaacgaagaagagatcacgcttgacaccatcgaccagtct
tacctcgtggttgaagagcgcgagaaattcaagcacctgtgcaactttatcaggcagaac
aaggacagcaaggcgcagaccatagtgtttgcagcgacaaagcagcgcgccgacaggatt
gcgtacaacctcaggcgcgaaggctttagcgcagtcaccatccacggcgacctgtcgcaa
aggcagcgcgataacgcgatgcacaagttcaggaaggggaccgaagacatcctcgtcgcg
acagacattgcggcaaggggaatcgacgtcccggctgtaggtcacgtcatcaactacgac
gtgccagacgaccccaacgtgtacttccataggatcggcaggacagcgagggccggcgct
gaaggcaaggcaatatctcttgtctcaaacgacaggattgccgactttgaccgcatcctg
gcgcaaactcagctgccgatacgcaagctcaatgacgaaatgggaattgtcgtcccagtg
gtggcgcagcgccagccgcagtcgtatggcggtggtggaggatatcgcaggcgcggcggc
tatggtggcggtggagacaggggataccgcggtggcggaagacgctacggcagtgatggc
tatggcggctacaggcgcggcggaggccacagaggctacggtggcagcggaagcggctac
cgaggcggtggcggaagacgctacggcaataacaactactactag
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