Nannochloropsis gaditana: NGA_0026402
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Entry
NGA_0026402 CDS
T02917
Symbol
CNOT10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NGA_0026402 (CNOT10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0026402 (CNOT10)
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
NGA_0026402 (CNOT10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_14
TPR_1
ANAPC3
TPR_10
Motif
Other DBs
NCBI-GeneID:
17360566
NCBI-ProteinID:
XP_005853792
LinkDB
All DBs
Position
Unknown
AA seq
834 aa
AA seq
DB search
MSGSGKASIACQARAFYGVGKYEKALECLQQLSMQPGGGDDPRLQGNLVLTEHAKGGFKR
PLIIKDRITTLRNSLKTRSEKVGSVQGAFRAKESLRLDAEDEDGDEEADDTETDTSVLLY
NLAALNFHEKQYGASQHILHALFARIEVLEEPLAVQVCFLFLDVLLHSARGNIHTVKDRE
RLSHNTAALLAYLERPHAFSSTALAASEMEDKNGNGSAESLVGSGKGLETAEFTFRLHLY
KAKVRLLLRDIKSSKKELKSALEIFQRELRPNPADPSASGKGGALGGGDSDDEVATAAST
ATTAGNTLMGGYDASLPPAGVANVAGLYLKANLEYLRQNYRKALKLLASCHRGEDSAMGA
AYLNDMGCLHSKMGLHSVALQYFQRAVASSGQDRPASANGSPAGETPGMPLLPGGRPLET
DGRVLPHTFCEIAYNTGLQLLILGRSVQAFRCFENASLVFYNRPRVWLRMAECCVHAYRE
EEGRREGPVRDRLVRRVVGRGPHRRLVLATRRGGDCREFQGGDGAGGARGGGLDGSVGEE
ARGRCTLIYAVKCLQNALFLLSVASQGGGRSRLPMTSLLGGSKLAGAGETGGEGGSLDTS
NGSVGGGEQHETSALGGSTGAAYASADKKRGSWQEQGDAQVEQVVLLTLSYVYLCLHEPV
LALHYAELLLTRGAGWAEDEGNRVAARTYAAEALCVLGRPDEALKHLLPGGTPLSEEAGV
SSLQKQCQAESKRVVVTAESFLPPEHFAARARCALHLNLANVYLLQNNLAAAEKCVGLGL
AACPTSPDALRCLVFILLRTGNTSAALEALKSRRPLSLSVPPSPSTMPPLPVHR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtagtggcaaagcttccatcgcgtgtcaggcacgcgctttttatggtgtgggg
aagtacgaaaaggcgttggaatgccttcaacagctgtctatgcagcctgggggaggggac
gacccacgcctgcaaggcaatttggtgttgacagaacatgccaagggcggtttcaaacgc
cctctgattataaaagatcgtattacgacgttgagaaactctcttaagacacggtctgaa
aaggttggcagtgtccaaggagctttcagggccaaagaatcccttcgcctcgacgcggag
gacgaggacggcgacgaggaagcagacgacaccgagacggacacctccgtcctgctctac
aatcttgcagctctgaattttcacgagaagcagtacggagcgtctcagcatatattgcac
gccttgttcgcccgcatcgaagtcctggaagaacctttagcggtgcaggtctgcttcctc
ttcctcgacgtgctcctgcatagcgcgcggggcaatatacacacagtaaaagatcgtgaa
cgcctttcccacaacacggctgcacttttggcgtatctggagcgaccgcacgcatttagt
tccacggctctggccgcgtcagagatggaagacaagaacggcaacggcagtgcggagagc
ctcgtcggctcgggcaagggcctagagacggctgaatttaccttccgcctgcacttgtac
aaggcaaaggtgcgactgcttctgagggatatcaagtcctcaaaaaaggagctgaaaagc
gccctggagatatttcagcgggagttgcggcccaacccggcagacccttcggcgtcgggt
aaggggggcgcgctcgggggcggagactcggatgacgaggtggccacagccgcttccacg
gccaccacggcaggcaacactctgatggggggatatgatgcctcgctgccgcccgccgga
gttgcaaatgtggcgggcttgtacctgaaggccaacctggagtacctgcggcagaactac
cggaaggcgctgaagctcttggcctcctgccaccggggggaggacagcgcgatgggcgct
gcctacctgaatgacatgggctgcttgcattcgaagatgggtctgcactcagtggccctg
caatactttcaaagggcggtggcctcctcaggccaagatcgaccggccagcgccaacggc
tccccggcaggcgagacccccggcatgcccctcttgcccggcggccggcccctggagacg
gatggccgcgtcctcccgcatacgttctgcgaaattgcctacaacacaggcctgcaactc
ctcatcctcggccgctccgtacaggctttccggtgcttcgagaacgcctctttggtcttc
tacaaccgcccgcgcgtctggctgcggatggccgagtgttgcgtgcacgcgtaccgggag
gaggagggccggcgcgagggtccggtgcgcgaccgcttggtcaggcgggtggtgggtcgg
ggcccgcaccggcgcttggtgctagcgacgaggaggggcggcgactgccgcgagtttcag
ggcggggacggcgcgggaggagcaagaggcggtggtttagatgggagcgtcggggaggaa
gcacggggccggtgtacgcttatttatgccgtcaaatgcctgcaaaacgcgctcttcctt
ctctcagtcgcctcccaggggggcggccggtcgcggctgcccatgacctctctgctgggc
ggaagtaaattggcaggggctggggagacaggcggggagggtggaagcctggacacaagc
aacgggagtgtgggtggcggtgagcagcacgagacctcggcactggggggcagcacgggt
gccgcatatgcaagcgcagacaagaaaaggggatcttggcaggagcaaggcgacgctcag
gtagagcaggtcgtccttctgacgctctcctacgtctatctttgcctgcacgagcccgtc
ttggccctgcattacgcagagctcctcctcacccggggggcgggatgggcggaggacgag
ggcaatcgagtggccgcccgtacctacgcggcggaggccctgtgtgtcctgggccggcct
gacgaggccttgaagcacctgctgccgggtggcactccgctctccgaggaggcaggggta
agctcattgcagaagcagtgccaagccgaaagcaagagggttgtggtaacggcggagtcc
ttcctaccgcccgagcatttcgctgctcgtgcccgatgcgcccttcacctcaatcttgcc
aacgtctacctgctgcagaacaacctggcggctgccgaaaaatgtgtcggattgggtctc
gccgcctgcccaaccagtccggacgccctgcgctgcctggtattcatcctgctgcgcact
gggaacacgtccgcggctctggaagctctcaagtccaggaggcccctgagcttgagcgtg
cctccttcacccagcacaatgccgccactgcccgtgcatcggtaa
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