Nannochloropsis gaditana: NGA_0168600
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Entry
NGA_0168600 CDS
T02917
Symbol
DDX23
Name
(RefSeq) ATP-dependent RNA helicase DDX23/PRP28
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NGA_0168600 (DDX23)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngd03041
]
NGA_0168600 (DDX23)
Enzymes [BR:
ngd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NGA_0168600 (DDX23)
Spliceosome [BR:
ngd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
NGA_0168600 (DDX23)
Complex C
U5 SnRNP specific factors
NGA_0168600 (DDX23)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P-loop_SecA
ERCC3_RAD25_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
17361129
NCBI-ProteinID:
XP_005854357
LinkDB
All DBs
Position
Unknown
AA seq
820 aa
AA seq
DB search
MSSLKRDHENGHVVDDGEQQVKRAKMDVREEEKEAGPPPEEALRIAEIAARAEARAAARA
SATGSNGGRDAGGNGGAGGIAKGNHKLPPLPTLIEGGAHEVKFLTKKQREQLALQKLQEK
RAAEAPSVKRTGMAMKDVGKGGSAGDGGMGPPRPGSHRDRDGREGSREGGWRDGARGRAS
DRGAREERERGGRGLSREERERERLERQRQEELQALKDHYLGKKEVKRRVVKPSEKFARI
FQFDWEASEDTSRDSNPLYNQRLEVTPLFGRGYVAGVDMREQRKTNRYLEALTLRRQEEE
RRAEEEAGVSRGDRRDKEEERRSFMEDMRRRREAEARGMERATIGVLGQHWRDKSLESMT
ERDWRIFREDFDISMRVGRQRVLPLRNWEEANLPASLRKTVEGMGWKEPSPIQRAAIPVG
MGRRDIIGIAETGSGKTGAFAIPMINYCLTLPAEHRTRTPEEGPLALVMAPTRELAEQIE
AQVAILIEGTGLKSCSGVGGKPIEDQAFALREGVDILIGTPGRLKDLIDSRYLVLNQCNY
IVLDEADRMVDMGFEEQVVAVLDTMGGLLKSENEEEADRQADAAQKGEQLYRVTAMFSAT
MPPAVERIARSYLRAPATIKIGEANSGKNKRIEQRLIFTTEPGKRKAVVDLLTSPKKEDK
FIVFVNAKRACDVLARHLEQTRISCGILHGGKSQDQREASLEAFRNGVFTVLVATDVAAR
GLDIPDVSHVINYDMPAKIENYCHRIGRTGRAGKEGLATTLLTENDSEVFHDLKNYLEST
DMKVPPELGKHAAAQQAPGTRNEDGKIMGQKRDSVMYSKR
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctctcaagcgcgaccacgaaaatgggcatgtcgtggatgatggcgagcagcaa
gtgaaacgggcgaagatggatgtaagagaggaggagaaagaggcggggccgccgcccgag
gaggccttgcgcatcgcggagattgcggcgcgggctgaagctagggctgccgcgagagcg
tcggcaacagggagtaatggagggagagatgcaggagggaacggtggagcgggagggatt
gcgaaagggaaccataagcttccgcctttgccaaccctgattgaagggggagcgcatgag
gtgaagtttctgaccaagaaacaacgggagcaactggcgttgcagaaattgcaggagaag
cgggcagcagaagccccgagtgtgaagaggaccggtatggcaatgaaggatgtcggcaag
ggtggcagtgcgggggatggaggcatgggtccgccccggcccgggtcgcaccgggaccgc
gacgggcgagagggaagccgggaaggaggctggagggatggggcccgtgggagggcttcc
gatcgtggagctagggaggagagggagcgtggaggaaggggtttgagtcgggaagagcgg
gagcgggagcgtttggagcggcaacgccaagaagagctgcaggcgctgaaagaccactat
ctggggaagaaggaggtgaagcggcgcgtggtgaagcccagcgagaagttcgcgcgcatt
ttccagtttgactgggaggcttccgaagacacgagccgggacagcaaccccctgtacaac
cagcggctggaggtgacccccttgttcgggagggggtacgtggcgggcgtggatatgcgg
gagcagcggaagacgaacaggtacctggaggcgctgacgctgagacggcaggaggaggag
cgacgggcggaggaggaggcgggcgtgagtcggggggacaggcgggacaaggaggaagag
cgccggtccttcatggaggacatgcggcggcggcgggaggcggaggctcggggcatggag
agggcgacgattggggtgctggggcagcactggcgggacaagagcttggagagcatgacc
gagagggactggcggatcttccgggaggacttcgacatcagcatgcgggtcgggcgccag
cgcgtcttgcctcttcgcaactgggaggaggcgaacctgcctgccagcttgcgcaagacc
gttgagggcatgggctggaaagagccctcgcccattcagcgggctgccatcccggtgggg
atgggccgccgggacatcatagggatcgcggagacggggtctgggaagacgggggccttc
gccatccccatgatcaactactgcctgaccctgccggcggagcaccggacccgcacgccg
gaggaagggccgctggctctggtcatggcgccaacccgggagctggcggagcagatcgag
gcgcaggttgcgattttgatcgaggggacgggtctgaagagttgctcgggcgtgggggga
aagcccattgaggaccaagcctttgccctgcgcgagggcgtggacatattgattgggacg
ccgggcaggctcaaggacctgatcgactcccggtacctggtgctgaaccagtgcaactac
atcgttctggacgaggcggacaggatggtggacatgggcttcgaggagcaggtggtggcc
gtgctcgacaccatgggaggcctcctgaagtccgagaacgaggaggaggcggaccggcag
gcggacgcggcgcagaagggggagcagctctaccgtgtcaccgccatgttctcggccacc
atgccgccggcagtggagcgcatcgctcggtcctacctgagggcgcccgccacgatcaag
atcggagaggccaacagcgggaagaacaagcggatcgagcaacgcctcatcttcaccacg
gagccgggaaagaggaaggcggtggtggatctcctgaccagcccgaagaaagaggacaag
ttcatcgtctttgtcaacgccaagcgggcctgcgatgtgctggctcggcatctggagcag
acgcgcatctcctgcgggattctgcatgggggcaagagccaggaccagcgcgaggccagc
ctggaggcctttcgaaacggggttttcaccgtcttggtggccacagacgtggcagcccga
ggcctggacatccccgacgtctcgcatgtgatcaattacgacatgcccgctaagatagag
aactactgccacaggatcgggcggacggggcgcgcgggcaaggaggggctggcgacgacg
ctcctgacggagaacgacagcgaggtcttccacgacttgaagaactacctggaatccacg
gacatgaaggtgcctcccgagcttgggaagcacgcggccgcccagcaagccccggggacc
cgcaacgaggacggcaagatcatgggccagaagagggacagcgtcatgtactcgaagcgt
taa
DBGET
integrated database retrieval system
