Nannochloropsis gaditana: NGA_0191100
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Entry
NGA_0191100 CDS
T02917
Symbol
U2AF1
Name
(RefSeq) splicing factor U2AF 35 kDa subunit
KO
K12836
splicing factor U2AF 35 kDa subunit
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NGA_0191100 (U2AF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngd03041
]
NGA_0191100 (U2AF1)
Spliceosome [BR:
ngd03041
]
Complex A
U2 snRNP components
U2 related factors
NGA_0191100 (U2AF1)
Complex B
NGA_0191100 (U2AF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
Tachystatin_B
Motif
Other DBs
NCBI-GeneID:
17361117
NCBI-ProteinID:
XP_005854346
LinkDB
All DBs
Position
Unknown
AA seq
313 aa
AA seq
DB search
MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHL
GNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNP
ASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEH
MIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPY
CNFLHVKTISRALRRDLERQARRRRERKRSRSEDRRSRSSERGHRREVGEEEEDRGEDDD
LPKEDYVPSLAIS
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagctactacgggcgcggagggagcggcgacgattatggtcgtgatcgcgggtaccga
ggtggacgtgatcgtggtgaccgaggaggctactatgaagaccgtcgaggtggagacaga
cgcaatgatcgacgcggccctcgcgaggatggcgggcgcaattggcgcgaccgccaccta
ggaaattccaaggggggggcagagcatttggcccggattcatggcacggaagaggacaaa
gtgaattgccccttttacttcaaaattggggcatgtcggcacggagagcggtgctcgcgg
aagcacaacaagcctcccttctctcagactttgttgttgaagcatatgtacaagaatccg
gcctcagcactctttacggctccagcgcggggagaaagggccgccccccaaggtgcgaat
gatgcgacgaaccaagcgggcctggatgactttgaagatttttttgaagaagtgtacgag
gagctggcaaagttcggggaggtggaagggatgcacgtctgcgacaatctgggcgagcac
atgatcggaaacgtgtacgccaagtacgcagacgaggaagaggcagacgaggcccgacaa
gccttgaacgggcggttttacgccggccgggtcctggaggtggagttctcgcccgtgacg
gactttcgagaggcgcgctgccgccagtacgacgaggggcagtgcacgtacgggccctat
tgcaacttcttgcacgtaaagaccatttcaagggcgctgcgtcgagaccttgaacggcaa
gcgcggcgtaggcgggaacgtaagcggagccggtcggaggaccggaggagtaggagctca
gagagggggcataggcgggaggtgggggaggaggaggaggacaggggggaggatgacgac
ttgccgaaggaggactatgttccttctttagccatttcg
DBGET
integrated database retrieval system
