Nannochloropsis gaditana: NGA_0248202
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Entry
NGA_0248202 CDS
T02917
Symbol
SYF1
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NGA_0248202 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0248202 (SYF1)
03041 Spliceosome [BR:
ngd03041
]
NGA_0248202 (SYF1)
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
NGA_0248202 (SYF1)
Spliceosome [BR:
ngd03041
]
Complex B
Other components
Prp19-related factors
NGA_0248202 (SYF1)
Complex C
NGA_0248202 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_15
Mad3_BUB1_I
TPR_12
TPR_19
NRDE-2
TPR_1
ARM_TT21
TPR_7
TPR_16
TPR_IF140_C
TPR_10
DALR_1
Motif
Other DBs
NCBI-GeneID:
17362278
NCBI-ProteinID:
XP_005855497
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MTHAGTIMANDRGVVSDEIRALLEDEQDAEFEEEIARNPFSLKSWLRYLNAKTQAKPVKR
YLIYERALKFLPGSYKLWWAYLQERKEQVDGRVPVSHPRYQILLNTFERALVHLSRMPRV
WLDYLHTLVDMKKATKTRRAFDAALQSLPITQHERIWSLYLPWAQNLGVKETAIRVFRRY
LKYDPSQRESYVDFMEKLGEMEEAAVHLAICVNDDAFFSPKGSSKHALWMRLCDMCARHP
TAISRRLKVDAIIRSGLARFTDETGKLWCKLADYYIRQGQFERARDVYEEALSTVLTVRD
FTMVFDAYSQCEESLLTARVAMLAEEEEPEDETDDDLDVEGDDTDLRLARLEDLMERRPI
LLSSVLLRQNPHNVHEWHKRAKLFQAQNDPHKVIVCFTEAVKTVDPKKAFGKLYSLWTAF
AKYYEEHDDIDNARVVLNKATLVNFKGVEELAGVYCTWAEMEIRHENYEEALQVMQHAVT
EPSQAIQRRRQTEAQGRALGGGKKGGEERAEMIASIPVQERVHKSTRVWSLFLDLEESLG
TVATTKAAYERCLELKVATPQIILNFASFLEENAYHEEAFRAYEKGVSVFGWPHVKPLWS
LYLQKFVARYGGSKLERARDLFEQCLEKVPADEAADFYIRYAKLEEEHGLARHAMAIYDR
GTQAVPEDKRYDFFLLYIKKVIVEKPPLSELGRMHAQYWVRKCVGHTCMSLAHRHASFLA
LLMLVLSSLLLPHFLFSFKVEALYGVTRTREVYQKAIEVLPDEGAKNMCIQFAELERKLG
EIDRARAVYTHGANFADPRRDPGYWKKWQDFEVNYMADDAMAMVQAKEGGGEEKDEATAD
AETLAREAAKAEEKAKRAQAARVMAGGAGGVKRKGGSEGEELEAVERQAKRLQAVTAAAV
AALERNEEEIDIEDMEEEGEEGDRIQEGGEEKEIHIEGDTEIQVKAKPVPAAVFARAGLE
EDAKDGEVGNGGSMGALERLKKAGGQR
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgactcacgcgggcactatcatggcaaatgatagaggagttgtcagcgacgagattcgc
gctttgctggaagatgagcaggacgcagagttcgaggaagaaatcgcccgaaaccctttc
tccctcaaaagttggctccgatatctgaatgcaaaaactcaagccaagccggtgaagcgc
tatctgatctatgagagagctttaaagttccttccaggctcttacaagctgtggtgggcg
tatttgcaggagcggaaagagcaggtggatgggagagttcctgtcagccatcctcgctat
cagattctgctgaataccttcgagcgggcccttgtgcatctctcgcgcatgccccgcgtc
tggctcgactatctgcatactctcgtcgacatgaaaaaggcgaccaagactcgtcgcgcc
ttcgacgccgcacttcagtcccttcccatcacccagcacgagcgaatctggtctctgtac
cttccgtgggcccaaaatttaggcgttaaggagactgcaattcgtgtcttccggcgatac
ttgaagtacgacccttctcagcgcgagtcctacgtcgattttatggagaaattgggggaa
atggaggaggccgctgtgcatttggccatctgtgtgaacgacgacgccttcttctctccg
aaaggctcctccaaacacgccctctggatgcgcctctgcgacatgtgtgcgcgccatccg
acggctatctcgcgtcgtctcaaggtggacgccattatccgaagcggcctcgcgcgcttc
acggacgaaaccgggaagctgtggtgcaagctggcagactactacatccgccagggtcag
tttgaacgggcccgtgacgtctacgaggaggcgctttccaccgtcctgacagtgcgcgac
ttcacgatggtttttgacgcttactcccagtgcgaggagtctctgttgacggcccgcgtg
gcaatgttggcagaggaagaggaaccagaggacgaaacggacgatgacctggacgtggag
ggcgacgacacggatctgcgactggcccggttggaggatttgatggagcgtcggcccatt
ttgctgtcctccgtcctcctgcgtcagaaccctcacaacgtccacgagtggcacaagcgg
gccaaacttttccaagcccagaacgatcctcacaaggtcatcgtctgtttcaccgaggcc
gtcaagaccgtcgaccccaagaaggctttcggaaagctctattccctctggaccgctttc
gccaagtactatgaggagcatgacgacattgacaacgctcgcgtggtgctcaacaaggct
actttggtcaattttaagggcgtggaagagcttgctggtgtctattgcacctgggcagag
atggaaatccggcacgagaactacgaggaggccttacaggtgatgcaacacgccgtcact
gagccgtctcaggccatccaacgccggcggcagaccgaggctcagggccgcgcgttggga
ggcgggaagaaggggggcgaggagcgggcagagatgattgcaagcatccctgtgcaggaa
cgcgtgcacaaatccactcgcgtctggtccttgttcttggacctagaagaatcccttggg
actgttgccaccacaaaggctgcctacgaacggtgtttggagctcaaggtcgccacaccc
caaataatcctgaactttgcctctttcctggaagaaaatgcgtaccacgaggaggctttc
cgcgcctacgagaagggggtatctgtcttcggttggcctcacgtcaagcccctgtggtct
ctgtaccttcagaaattcgtcgcccggtatggtgggagcaagctggagcgggcccgcgat
ttgttcgaacagtgcctggagaaggtcccagcggatgaggctgccgacttctacatccgg
tacgcaaagctggaggaagaacacggcctcgcccgacacgcgatggctatatacgatcgg
gggacccaggcagtgcccgaggacaagcgttacgatttctttctgctctacatcaagaag
gtaattgtcgagaaaccccccctctctgagcttggacgcatgcacgcgcagtactgggta
cgcaaatgcgttggtcacacgtgtatgtcgctggctcatcgacatgcctccttcctcgcc
cttcttatgttggtgctgtcctcccttcttctcccccactttctcttctcgttcaaggtg
gaggctctctacggtgtcacccgcactcgggaagtataccagaaagccatcgaggtctta
cccgacgagggggctaaaaacatgtgcatccagtttgccgaattggagcggaagcttggc
gaaatcgaccgagcgcgtgctgtttatacacatggcgccaactttgcggatccacgccgt
gatcctggttattggaagaaatggcaagattttgaggttaattacatggcagatgacgct
atggccatggtgcaagcgaaggagggtgggggggaggaaaaagacgaggcgaccgctgac
gctgagaccctggctcgagaagcggccaaggcggaggagaaggcgaaaagggctcaagct
gcacgggtcatggccggaggagcgggtggtgtcaaaaggaagggaggaagcgagggggag
gaactggaagcggtggagagacaggccaagaggcttcaggcagtgacagcagcggctgtt
gcagcattggaacggaatgaagaggagatagacattgaggacatggaggaggagggggag
gagggagacaggatacaggagggaggggaggaaaaggagatccacattgagggggacacc
gaaatacaggtgaaggccaagcctgttccggctgcagtgtttgcaagggcagggcttgag
gaggacgcaaaagatggagaggtagggaatgggggaagtatgggagctctggaacgcctg
aagaaagccggaggccaaagatag
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