Nannochloropsis gaditana: NGA_0364100
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Entry
NGA_0364100 CDS
T02917
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03013
Nucleocytoplasmic transport
ngd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
NGA_0364100 (UPF2)
03015 mRNA surveillance pathway
NGA_0364100 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0364100 (UPF2)
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
NGA_0364100 (UPF2)
mRNA cycle factors
P-body specific factors
NGA_0364100 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Motif
Other DBs
NCBI-GeneID:
17361500
NCBI-ProteinID:
XP_005854729
LinkDB
All DBs
Position
Unknown
AA seq
419 aa
AA seq
DB search
MDVIVEEGGEEGGEDDEGLTDEYRSGLKEEDGKEGVEEGATPAHYQVNHLLHDILPLCYE
KEKTDAFILQIAPFVKRKGVAKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVE
LACALLESCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQR
TTTRQTVLLPPLYAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEV
FFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRD
TQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHD
PRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYV
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcatagtggaggaggggggggaggaagggggggaggacgacgaaggcctgacg
gacgagtaccggtctggtttgaaggaggaggacgggaaggagggcgtggaggagggagca
acgccggcccactaccaggtcaaccacttgctgcatgacattttgccgctctgctacgaa
aaggagaagacggacgcatttatattgcaaattgctccttttgtgaagcggaaaggggtg
gcgaagcgcaagaccgtcaagtacgtcggagagctcgtcaagttcaagatttgtcccccc
attgtgcctttcacattcctcaacgcctgcttggaagcgttttcccgccacaacgtggag
ctcgcctgtgccctgctggaaagctgcggacgcttcctcttcctcactcctcacacgcac
acgcgcctgaagggctacttgagcaccatggagaggctcaagcgggtgaaatcgctcgac
cccaccctggaggttttgatcgacaacgcctgcctgatttgcaaccctccttcccagcgg
acaacgacccggcaaaccgtcctccttcccccgctctatgcctaccttcgtttcctcctc
tttgagcgcctcagcccgaaaaacaccgacgacgtcctctattccctgcgcaaatttccc
tggaaaactccgagggggggggcgccagccgaagccacagggttgagtgagctggaagtg
tttttcctccgctcggtcctgcaagccgcgcggggtaagttccacgccttgcatgccctg
gcggacgtggtggctggcctggggaaataccacgagaacatggccgtgagcatggtcgac
gaggtcttggaggagctcaaacgggggttggaaacggcggggggacgccgggatcgggac
acccaaggcttcttggccctcagccgtttattgggcgagttttataactacaatttgatt
cctcatgccttggttttcgacacgttgtaccttttcctgcactacggccacgaggtgcct
ccgcacccctccctgccttcctccatcccgccctcgttccctccctacgtcacgcacgac
cctcgcatcctcacacccttggatccccccgcagataccttccgctgccacctcgtcatc
aaccttctgcaggcctgcggtccgctcttggcgggcaaagggcacgagaaagtgcgaggg
aagctttccctttttctcacctacttccaacgctacctcttttgtcgcggctacgta
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