Nannochloropsis gaditana: NGA_0366300
Help
Entry
NGA_0366300 CDS
T02917
Symbol
RPA1
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NGA_0366300 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngd03021
]
NGA_0366300 (RPA1)
Enzymes [BR:
ngd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NGA_0366300 (RPA1)
Transcription machinery [BR:
ngd03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
NGA_0366300 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
17361750
NCBI-ProteinID:
XP_005854973
LinkDB
All DBs
Position
Unknown
AA seq
1873 aa
AA seq
DB search
MMWRFSITMTERCVVRHDVSEVQFGVYKEEEILRLSVVRVSTAATYDRLGNPLPGGLYDP
AMGPLDARSICVTCNLSMRDCPGHMGHFPLSLHVYNPLTFGIVFQALRVKCFGCHGFRLS
TFPCNVLALKLGLIDAGLAHEADSLDQALFRADLHRSTILRDTEMRLRRHLQTAGQVPKS
WIPGETKIKRRALIKDFLQEVLSCKTCDRCSAPKTTVRKDGYTKFFVRGRRAGHSRGAGA
HIPSALAVVRNGRHEVECGNGFGDDSDGEESEEGGGEEDAASQERFAARGGDTEAEGGEY
MAPAEVQMHMKLLWEAEPELATLIWGKAAVEKSVFSAPGADTGRADGWKTLFWRVLPVTP
SRFRPPSKNDDGSLAEHPQNYNVIKIMNLDERIRALLRKEDGGEGATGPENLPAEALSRV
LSTWIDLQNAVNGYIDSSKDANARLGGGNLTPGIRQGLEKKEGLFRMHMMGKRVNFACRS
VISPDPYIGTSEIGLPLRFAKVLTYSQPVTPFNAAQLREAVERGAEGHPGANYVEDARGR
LIDLRRMDAGRRRALAARLLTPPGQTVWRHLQDGDMVLMNRQPTLHKPGIMAHRARVLRS
PAQQTIRMHYANCNTYNADFDGDEMNCHFPQDELSRAEAETIACTDEQYLAPTNGKPLRG
LIQDHVGSGVKLTGKDCFLSRADFQHILFCTLSGLPGVEVVPPYGHIYMPAPAIWKPQEL
WTGKQMISVLLQHLSEGLPPLNLDFKAKTPAVAFGVDQEEHEVVVRGGDLIRGVLDKAAF
GASEGGLVHGVYEFYGPRFAGRLLTALGRLFTVYLQFAGHTCGVEDLVLSRAAEQRRRAL
ITRAGRLGGLAMYCYTSGTAFEPPPLPPLPSASGQAEKDGASADGLSAADLARVQARTAE
LLEEDMRTGQVTQAAAIDNFMRTVLSPVSSDIIKACLPDGLTKPFPHNAFSLMVSTGAKG
STVNQSQISCGLGQQELEGRRVPLMPSGKSLPSFPPYDPSPRAGGFIVDRFLTGVRPQEY
YFHCMAGREGLIDTAVKTSRSGYLQRCLVKGLEELRVHYDNTVRDADAGVVQFLYGEDGV
DPLHGKYLDGQAPQMTALARNFAALLCQYKVDLKFLERTGMDLKTARAMHEEIKAARLQI
KEQAQKREQKSLSAVRPAQLKVGNMVLTKRLKRTRTEWITGAWLPGWEPAEVVKVHGAKG
ASRPATYDLRYISDGKVAKRVPRRIRHTVVEPSRPAASALDIPPPPPSSSASQVDLIRWP
YLPDPVLGRAKTQLGLHLGAISERFQDAIEDYLGRDPEHLFQKSEMGGSKSKAGLELLLW
LKYMRSLTSPGEAVGSIAGQSIGEPSTQMTLNTFHLAGHGGANVTLGIPRLREIIMTASR
NPKTPSMTVPLCTSISRSEAQRLSARLRRLQLLEVVHHTQGGVLVKERLGRCASSGVTWQ
RYYTVSLRLHDEEVLQEAFGLSHEEMFEVIATRFVRQLLASVTAELRKVASRDVVRLLKE
RRGNAADAEARESGEASEDEADMTGLVGGRGPGMKAAARAGAKTSPKLAAMDVDGEEDEE
REEEEDGDEAQGTLSFGRKEERGEYEPDEEEDPSEDIGDDASGIEEGVENSGEGQLSEVP
AKQRRNGSRFDDVAAVAKIDHPFFENLRFERETGVAHITLKTRASHRRLLMVSIVEAAAE
RCTVRVSKGIAQAFVVEGKDGRCSIQTEGCNLSELWEVGDAALDLNNITSNDIWAMHQTY
GVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQM
SFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVDMNRKASESYVED
PLKEEEGDRMEEA
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atgatgtggcgtttttcgatcaccatgacggagcgctgcgtcgtccggcacgatgtatca
gaagtacagtttggggtgtacaaagaggaagagattttgcggctgagtgtcgttcgggtg
agcacagcagcaacgtacgatcgactaggcaatcccctacccggtggattatacgacccc
gccatgggaccgctggacgcacgctctatttgtgtcacgtgcaacttgtccatgcgcgac
tgtcccggacatatgggtcattttcccctttcccttcacgtctacaatcccttgacgttt
gggatagtttttcaggcacttagggtcaagtgttttggatgccacggcttccgtttatcc
acatttccgtgtaatgttctagcgctgaaattgggtttgattgatgccgggctagcgcac
gaggctgatagcttggaccaggcactttttcgggcggatctacatcgcagcacgattctt
cgcgataccgaaatgcgtctgcgtcgacaccttcaaacagctggtcaagtgcccaaaagc
tggataccaggagaaacgaaaataaaacgacgcgccttgatcaaagattttctgcaagaa
gttttaagctgcaagacttgtgacaggtgtagtgcgcccaaaaccacggttagaaaagac
gggtatacgaagtttttcgtgagaggccgacgcgccgggcatagtcgtggcgcgggagca
cacattccctctgctcttgctgttgtacggaatgggagacatgaggtcgagtgtggaaat
gggtttggggatgatagtgatggagaggagagcgaggagggcggcggggaggaagacgcg
gcgtcccaggagagatttgccgcgcgggggggagacacggaggcggagggcggcgaatac
atggcacccgcagaggtacagatgcatatgaagcttctatgggaagccgagccggagcta
gccacgctgatatggggcaaagctgcggtggaaaagtctgtcttttcggcgccgggggcg
gacaccgggagggctgatggatggaagaccctcttctggcgcgtgctacccgtcacgccc
tcacgcttccgaccgcctagcaaaaacgatgacggtagcctggcggagcacccgcagaac
tacaatgtcatcaagataatgaacctggacgagcggatacgcgccttgctgcgaaaggag
gacgggggcgagggggcgacagggcccgagaatctccccgccgaggcgctatcacgcgtt
ctttccacttggattgacctacagaatgccgtgaacgggtacatcgactcgagcaaggac
gcgaacgcccggctgggggggggcaacctgacccctgggatccggcaggggctggagaag
aaggaggggctcttccgcatgcatatgatgggcaagcgcgtcaatttcgcttgtcggtcc
gtcatatcccccgacccttacatcggcacttcggagattggcctcccactccgctttgcc
aaggttttgacctactcgcagcccgtcacgccatttaacgcggcgcagctccgagaggcg
gtggagaggggcgcagagggtcatccgggtgccaattatgtggaggacgcgaggggccga
ctgatcgacctgcggcgcatggatgcgggcagacgccgggcactggcggcccgcctcctg
accccgcccggacagacggtgtggagacatctccaagacggagatatggtcctgatgaac
cgccagccgacattgcacaagcctggtatcatggcccaccgcgcccgtgtcctccgaagc
cccgcccagcagaccattcggatgcactatgcaaattgtaacacgtacaatgcggacttc
gatggcgacgaaatgaattgtcattttcctcaagacgaactctcccgtgccgaggcggag
acgattgcctgcacggacgagcaataccttgcgcccaccaacggcaagcctctccggggt
ctgatccaggaccatgtgggaagtggagtcaagctcactgggaaggactgttttctgtca
cgggcggattttcagcatattcttttctgtacactttccgggttgccaggcgtggaagtc
gttcccccatacggtcatatctacatgcctgcccccgcgatttggaagccccaagaacta
tggactggcaagcaaatgatctcggtcctactgcagcacttaagtgagggtcttcctcca
cttaacctggactttaaggccaaaacgcccgccgtagctttcggcgtcgatcaggaggag
cacgaggtagtagtgcgtggcggagacttgatccgcggagtactagacaaagcggctttt
ggggcctccgagggtggtcttgtgcacggtgtctacgagttctacggtcctcgttttgcc
gggcggctgcttacagcattagggcgccttttcacagtctacttgcaattcgccggccac
acgtgcggtgtggaggacttggttttgagccgagcggcggagcaacgacgtcgcgcacta
atcacccgtgctggtcgcttagggggtttagccatgtattgctacacctctggtacggca
tttgagcctccgcccttgccgccgcttccctccgcctccggccaagctgagaaggatggg
gcctcggcggatggcctgagcgcagccgacctggccagagtacaagcccgcactgctgag
ttgttggaggaagatatgcgcacgggacaggtcactcaggcagcggccattgacaatttc
atgcgaacagtcttatccccggtttcaagcgatattataaaggcctgtcttccggatggg
ctgacgaagcctttccctcataacgcattttctctgatggtttccacgggtgccaaggga
agcacggtgaaccagagccaaatctcttgcggccttggtcagcaggaactagagggtcgg
cgcgtgcccttgatgccaagtggtaaatccctcccctccttccctccttacgatccgagc
ccacgggcaggcggatttatcgtggacaggtttctgacgggcgtccgaccgcaagagtac
tatttccactgtatggcagggcgggagggtctaattgacaccgcggtcaagactagccgc
tctggatacctccagcgctgccttgtgaagggcctggaggagctgcgcgtgcattacgat
aacactgtaagggacgcggacgcgggcgttgtgcaatttctttatggggaggatggcgta
gaccccttgcacggcaagtacctggatggacaagccccgcaaatgaccgctttggccaga
aactttgcggctttgttatgccagtacaaagtagacctgaagttcttggaacgcaccggt
atggatttaaagacagcccgcgctatgcatgaagaaatcaaggcagcgcgattgcaaatc
aaagagcaggcacagaaaagagagcagaaaagtttaagtgccgtgaggcctgcacaattg
aaggtaggcaacatggtgttgaccaaacgtctgaagcgaacgaggacagagtggatcacg
ggggcctggctgcctggttgggagcccgccgaggtggtgaaggtgcacggtgccaagggg
gcgagtcgtcctgccacttacgacctaaggtatatttcggatggtaaggtggccaagcgg
gtcccccggcgcattcgacacactgtcgtggagccctctcgcccagccgcctccgctctc
gacattcccccccctcctccctcctcatccgcttcgcaagtggatttaatccggtggccc
tatcttcctgacccggtgctgggacgagccaagacgcagttgggtctccatttgggagct
atcagcgaacggtttcaagatgcgattgaggactacctaggccgcgatcccgagcacctt
ttccaaaaatcagagatggggggctcaaagagcaaggctggtctagagttgttactttgg
ctcaagtacatgcgcagcttgacgtctccgggggaggcggtgggctccatcgcgggacag
tcgatcggagagccttccacccaaatgactctgaacaccttccacttggccgggcacggt
ggcgcaaacgtcacattgggcattccccggctccgcgaaatcattatgaccgccagtcgg
aacccgaagaccccctctatgaccgtcccgctctgtacttcgatctcacgctccgaggct
cagcgcctctcagcccgcctgcggcgcctgcagctgctcgaggttgtccaccacacacag
ggcggtgtcctggtcaaagagcggctagggaggtgtgccagtagtggggtgacctggcaa
cgctactacacggtgtccctccggctgcacgacgaggaggtgcttcaggaggcgtttggg
ttgagccacgaggagatgtttgaggtgattgccacgcgctttgtgaggcagctgctggcc
tctgtcacggcggaactgcggaaggttgccagccgagatgtcgtgagactcctcaaggag
cgtcgtgggaatgcagcagacgcggaggctcgagagtcgggagaggcgagcgaagacgaa
gcggacatgacaggcctcgttggcgggaggggcccggggatgaaggcggcagccagggca
ggcgcaaagacaagccccaagcttgctgcaatggatgtcgatggggaagaagacgaagaa
agagaggaagaggaggacggcgacgaggctcagggcactctgagcttcggacgaaaggag
gagcgtggcgagtacgagccggacgaggaggaggacccgagcgaggatatcggggacgat
gcttcagggatcgaagagggggttgagaattcaggcgaagggcaactatctgaagtgccc
gcaaagcaacggcgaaatggcagcaggtttgacgatgtcgccgctgtcgccaagattgat
catcctttcttcgagaacttacgctttgaacgtgaaaccggtgtggcccatatcacactc
aagacccgtgcctctcaccgccggttattaatggtcagtatagttgaggcagcagctgag
cgatgcacggtgcgtgtctctaaaggtattgcgcaagcttttgtagtggagggaaaagac
gggcgatgcagtatccagacagagggatgcaatctgtccgagttgtgggaggtcggtgac
gcagcactggatctaaacaacataactagcaatgacatttgggccatgcatcagacgtac
ggcgtggaggcggctcgggccacaattgtgaaggagataaaaggtgtttttggggcttac
ggtatcgctgtggaccctcgacacttgggtttggttgcagacttcatgacttatcaaggt
ggcttccgcgctttgaaccgtattggtatgtccgaggtctcatcgccatttttgcaaatg
agcttcgagactactgccaccttcctcacagaggccgcgctcaactctgagaaagatgat
ttgcaaactccatcggcgaagttggtcatgggccagcctacggggaatggcacagggtcg
tttgacattatgattcctgttgatatgaataggaaagccagcgagagctacgtcgaagat
cctctgaaggaagaggaaggagataggatggaggaggcttag
DBGET
integrated database retrieval system
