Nannochloropsis gaditana: NGA_0368900
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Entry
NGA_0368900 CDS
T02917
Symbol
PAN3
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NGA_0368900 (PAN3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0368900 (PAN3)
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
NGA_0368900 (PAN3)
mRNA degradation factors
3'-5' decay
Pan complex
NGA_0368900 (PAN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Kdo
Motif
Other DBs
NCBI-GeneID:
17361546
NCBI-ProteinID:
XP_005854773
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDV
GGRQDQPPPTPSAVPSRPTISTPGLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAV
NAPHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGG
GGGGIGRSRSSAGDLEILRVSSSASVDGLNTQAMPFEPGGSRGGGGATAGLPYGGEAEED
DLGDSLVNPLHHYGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLP
PDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRS
TPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSG
ARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLE
SETRKTLAELQTEDLAMLGRLILTLATRTLPTPQSLGAALAQVRQQYSPELHALSLQLCS
KPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAE
AMEGQDPAWNETGTRYILKLFKTKA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccggccgtgcatttcagccgcctggaagagaacaagagcaggagcagagtggc
ccttctttgcctccccgaaacccctggcaactgcagcagcaaaactatgagtcaatatct
ggacatggacctgctaccgcagagcaacgcccgccagtgggccttcctggagtcgatgta
ggagggcgccaagatcaaccacctcctactccttccgccgtaccctcccggcccaccatc
tccacgcctggtctctcactgtcctcatcttactcctttcaagggcagcaggctcagcat
ggacagtcacaacaacaaagtgaagacagacagcctccctcggtcctacggtatgcggtg
aacgcgcctcactttgtccccaaagcgtcaacagagagccccgctcttggggccaacgcc
agtccctctctacccgctcaagctagtttcggcaatttgaggtccacagccatgtccttc
gagccaagtgctgcctcaaataggctggacatgggggccgtacccttcgtgcccgggggc
ggggggggaggcattgggagaagcaggagcagcgccggcgacttagagatcctccgggtg
tcttcttccgcctccgtggacggcctcaacacccaagccatgccgtttgaacccggtggt
agccgcggtgggggcggcgcgaccgcggggctaccctatgggggagaggcggaggaagac
gacctcggtgattccctagtcaaccccctccatcattacggggacgagatcttcgactgg
tcctttggtgggagttctctcccggccccccctcgcatgaccttgcagcgcatgggggtg
cccgagcagttgcggcagttcttcctcttgaaggacctggacaagggccggagtctccct
ccagacgacccccgctacaaggagattcccccaggcttccaccacgcctaccccctggac
gacgcccaaaaagctaggggaacggcgggggcctttggctaccccagcgtcacgtacaaa
gtcctctctcacgaagacggtcgggtctacgccctccgtcgcttcgattccgtgcgctcc
acccccaagatcgtggcgggggcgctggagacttggcgccggatccaacatcccaacatc
atccagctgagcaaggtctttattcagcacggaaacgccctctttttcttgcacgagtat
catccaggggcgcaaagcgtcacccaacgctacgtcgactcctcccgcgggcactccggc
gcccgcccttcccgccttcccgagaaacttctctggtctttcgtgacccagctggtctcc
gccattcgggccgtgcatgccgcccaggctgcctgccgcatgctccacccgaaccacgtc
ctggtcaccacgggggcgcgtctccgcctggggtgcgcgggggtggtggacgtgttggaa
agcgagacccgcaagacgttggccgagctccaaaccgaggacctggccatgctcggtcga
ctgatcttgaccctggcaacccgcacgctgcctaccccccagagcctcggggccgccctc
gcgcaagtacggcaacagtactctccggagctccatgccttgagcctgcagctctgcagc
aagcccggcttactgagcgtctttgagctcgtgcccctcctgtctcggtatgccctggac
gagctggaccggcagtacgccgccgcggacgacctggaaggacacctctcccacgagtac
gagtcagggcgtttgttccgtctgtccctgaaactcgcccaagtgacggggcgggcggag
gccatggaggggcaggacccagcctggaacgagacaggcacgcggtacatcctgaagcta
ttcaagactaaggcatga
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