Nannochloropsis gaditana: NGA_0378100
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Entry
NGA_0378100 CDS
T02917
Symbol
CSL4
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NGA_0378100 (CSL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0378100 (CSL4)
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NGA_0378100 (CSL4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NGA_0378100 (CSL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
RRP4_S1
OB_RRP5_4th
S1
Motif
Other DBs
NCBI-GeneID:
17361648
NCBI-ProteinID:
XP_005854879
LinkDB
All DBs
Position
Unknown
AA seq
196 aa
AA seq
DB search
MPTSQAMDTPHQEIESAAFHLINQGQILQPEKEGDLPMLRVSNPYKADADHAGAQNVVLA
VGHVVTTRVLRITSKQAYVEILALGSVVLRQTCQGIIKKEDVSDHDIDRIEIPRCFRPGD
IVRARVVSLGDSRQYYLKTAESELGVVYARSQTQLEEGGAEGGGRVMVPVSWEAMMDPLT
KATEPRKVAKPSAKTD
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatcacaggccatggatacaccgcaccaggagatcgaatcggccgcatttcat
ctcatcaatcagggccagattcttcagcccgaaaaagagggggatctacccatgcttcgg
gtcagcaacccttacaaagcggacgccgaccacgcgggcgcccagaacgtcgttctcgct
gtgggtcatgtggtaacgacgcgggtcctacgcatcaccagcaaacaagcctacgtggaa
atccttgctctgggcagtgtcgttctccgacagacctgtcagggcatcatcaagaaagaa
gatgtgtcggatcacgacatcgatcgcatcgagattcctcgttgcttccgacctggagac
attgtgagggcgcgtgtggtgtcgcttggcgatagtcggcaatactacttaaagacggcc
gagagtgagctcggagtggtgtatgccagaagtcagacgcagctggaggagggcggggcg
gagggaggggggagagtgatggtgcctgtgtcgtgggaagccatgatggaccccttgact
aaagcaacagaaccacggaaggtcgccaagccttcagcaaagacagactag
DBGET
integrated database retrieval system
