Nannochloropsis gaditana: NGA_0380800
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Entry
NGA_0380800 CDS
T02917
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NGA_0380800 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0380800 (VCP)
03009 Ribosome biogenesis [BR:
ngd03009
]
NGA_0380800 (VCP)
04131 Membrane trafficking [BR:
ngd04131
]
NGA_0380800 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngd04147
]
NGA_0380800 (VCP)
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NGA_0380800 (VCP)
Ribosome biogenesis [BR:
ngd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NGA_0380800 (VCP)
Membrane trafficking [BR:
ngd04131
]
SNARE
SNARE associated proteins
Others
NGA_0380800 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NGA_0380800 (VCP)
Exosome [BR:
ngd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NGA_0380800 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_22
AAA_14
AAA_33
RNA_helicase
TIP49
nSTAND3
NPHP3_N
Mg_chelatase
AAA_25
AAA_17
Vps4_C
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
AAA_7
NACHT
SLFN-g3_helicase
ResIII
AAA_24
Sigma54_activ_2
Zeta_toxin
Molydop_binding
Zot
KAP_NTPase
Motif
Other DBs
NCBI-GeneID:
17361631
NCBI-ProteinID:
XP_005854857
LinkDB
All DBs
Position
Unknown
AA seq
895 aa
AA seq
DB search
MDESTGKAGDGVPTPVADGGAGGIVPMAEGSKKRSPNRLIVDEATNDDNSVIGLSAAKME
ELNLFRGDTVVVKGKKGRSTVCIVLTEEATDDSNVRMNKVVRKNLRVRLGDLVTLSPCSD
VPYGKRVHILPLDDTIEGVTGNLFDVYLKPYFLEAYRPVTKGDLFLVRQYVFFLGPAPFS
PPQAMHPVEFKVVETEPAPYCIVAPDTVIFCEGEPVKREDEERLDDVVCWEGVVDAGGCF
ARRVTRRRSRMSLFSRTDDVTSLPLRLPPLLLFKGYDDIGGCRRQMAQIREMIELPLRHP
TLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLR
KAFEEAEKNAPAIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGMKKRASVVVIGAT
NRPNSIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPEAIARDTHGFV
GADMAALCTEAAMQCIREKMDVIDIEDESIDAEVLNSMAVSQEHFKYALGVSNPSSLRET
VVEVPNINWDDIGGLEGVKRELQELVQYPVEHPEKFEKFGMSPSRGVLFYGPPGCGKTLM
AKAVANECTAGRRNRGREREKESQANFISVKGPELLTMWFGESEANVREVFEKARAAAPC
VLFFDELDSIAQSRGGNSGDGGGASDRVMNQLLTEMDGVGAKKNVFIIGATNRPDIIDPA
LMRPGRLDQLIYIPMPDYESRLGVLKATLRKSPVSKDVNLEYLAAQTDKFTGADLTEICQ
RAAKLAIREEIQRDMEREKLRAEAGEVDMEEEPMEEVTEAEILPRHFEDAVRNARRSVSD
RDLQQYSSFAQTLQQARSQITGPGGSLAAFRFPEGGEAAAGGAGAAAEEEDDLYS
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatccacgggtaaagctggcgatggcgttcccacccctgtggcagacgggggt
gccggcggcatagtccccatggctgagggcagcaaaaaacgcagtcccaaccgcttgatt
gttgacgaggccaccaacgacgacaacagtgttatcggcctctctgccgcaaagatggag
gagttaaacctcttccgtggagacacggtggtggtcaagggcaagaagggacgctcgacg
gtatgcatcgtactgactgaagaagccacggatgatagcaacgtacgcatgaacaaggtc
gtgcgcaagaatctgcgagtccgtctaggagacctggtgaccctctccccctgctcggac
gtgccttacgggaagcgcgtgcacatcctccctttagacgacaccatcgagggtgtcacg
ggaaaccttttcgacgtctatctcaagccctattttttggaggcctaccgtcctgtcaca
aagggggatctctttctcgtccgacagtacgtcttttttcttgggcctgctcccttctct
cctccacaggccatgcaccccgttgaattcaaggtagtggaaacagagccggcgccgtac
tgtatcgtagcccccgacacggtcatcttttgcgagggggagccggtcaagcgcgaggac
gaagagcgcctggacgatgtggtatgctgggagggcgtcgtggatgccggggggtgcttt
gcccgccgggtgacgcggagaaggagtcgcatgagcctattttctcgtactgacgacgtc
acgtcccttcccctccgccttcctcccctccttctattcaagggctacgacgacatcggt
ggctgccggcggcagatggcgcagatccgcgagatgattgagttgcccctgcgacacccg
accctgttcaaaacgctgggagtgaaacccccccgcggcgtcttactctatgggccgccg
ggatcaggaaagaccttgattgctcgcgccgtcgccaatgagaccggggccttcttcttt
ctcatcaacgggcctgaaatcatgtccaagatggcgggtgagtctgagagcaacttgcgc
aaggccttcgaggaagcagagaagaatgccccagccatcattttcatcgacgagatcgac
tccatcgcacccaagcgcgaaaagaccaacggggaggtggagcgtcgcatcgtctcgcag
ctactgaccttgatggatggcatgaagaagcgcgcctctgtggttgtgattggcgccaca
aacagacccaactccatcgatcccgccctccgtcgtttcggccgcttcgaccgggaaatc
gacattggcgtgcctgatgagaatggacgtctggagatcttccgcatccacactcgcaat
atgaagttggacgaagacgtggacccggaggcgattgcccgcgacacgcatggctttgtc
ggggcggacatggccgcactctgcacagaggctgctatgcaatgtatccgtgagaagatg
gacgtcattgatatcgaggatgagagcatcgacgccgaggttctgaattctatggctgtc
tctcaagagcacttcaaatacgcgctgggtgtgtccaatccctcctctctccgagagacg
gtcgtcgaggtgccaaacatcaattgggacgacatcggtggcctggaaggcgtcaagcgc
gagctccaggagcttgtccaataccctgtggagcacccagagaagtttgagaaatttggc
atgtctccttcccggggagtccttttctacggcccgcccgggtgcggcaagactcttatg
gccaaagctgtcgcaaacgaatgtacggcagggaggaggaatagagggagggaaagagag
aaggagagccaagccaacttcatctcggtcaagggaccagagcttttgactatgtggttc
ggcgagtccgaagccaacgtccgagaggttttcgaaaaagctcgagccgccgcgccctgt
gtccttttctttgacgaactggattccattgcgcagtctcgagggggaaacagcggagac
ggcggtggtgcttcggaccgcgtcatgaaccagctcttgacagaaatggacggcgttgga
gcgaagaagaatgtcttcatcattggtgccactaaccgtcctgatatcatcgatcctgcc
ctaatgcgccctggccgcctcgatcaacttatctatattcccatgcctgattacgagagt
cgactgggcgttttgaaagcgacacttcgcaaatctcccgtctcgaaggacgtcaatctc
gagtatttggccgcccagacggacaagtttactggcgccgatctgactgagatatgccag
cgggccgcaaaacttgctattcgtgaggagatccagcgagacatggaacgggaaaaactg
agggcggaggctggcgaggtggatatggaagaggagccgatggaagaggttaccgaagca
gagattcttcctcggcacttcgaagatgccgtccgcaacgctcgccgctcagtatcggat
cgagacctccagcaatactcttccttcgcacagacattgcagcaggctcgcagccaaatt
actggcccaggaggatccctagcggccttccgcttcccggagggaggtgaggcagctgct
ggaggggcaggggcggcagcagaggaggaagatgatttgtactcttaa
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