Nannochloropsis gaditana: NGA_0478100
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Entry
NGA_0478100 CDS
T02917
Name
(RefSeq) transcription elongation factor spt6
KO
K11292
transcription elongation factor SPT6
Organism
ngd
Nannochloropsis gaditana
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngd03021
]
NGA_0478100
03036 Chromosome and associated proteins [BR:
ngd03036
]
NGA_0478100
Transcription machinery [BR:
ngd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
NGA_0478100
Chromosome and associated proteins [BR:
ngd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
NGA_0478100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
Tex_central_region
Spt6_S1
SH2
HHH_9
HHH_3
Tex_YqgF
S1
Motif
Other DBs
NCBI-GeneID:
17360247
NCBI-ProteinID:
XP_005853476
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MPLDDKWEELQRRKSFALARFERFSAGHHGYSSRKAMDQEARIAALQEVEARLKEAEAGV
EEWKEKEEDEFAEESASLPQAKEALASFTDQKEAALKDLAALEAEMEAAEREKEKRESNG
QWEELEPVEEEEEEELRRLCPDSYRTMLDASREEEGVRDLHEYLGVIGQETSRRAHRLAF
DLYRKCRSLKGLRRFASLFSCPAPELGAALHASSTSGGDLDEQHRPLIPTPNMYPENAAA
EYTTPSLPKYEEVLRAAKHMLAMELAHEPRLRACFRQIYRAEATLTTHPTLKGHNEITDQ
FHRLHGFQFINKKPLYEFLQPPSDSQPDLFLRIMQAEREGFITFTIDAPANTAAESTSWT
PNGSSAWPSLLQTLEGLYMPYRTASLDTSLVDAWNEQRKDILSLTLSSHILPMLEAEVKR
EMARKAQEAVVAAAADALREVVNTGTYMPQYRNINCALIPPFEDFQLRLSQRFPFELTPL
SSSSLEVVAVFQASSRQEASFAVSVGRDGAVRDYVMLPPLRSGYDGDADQRDKLQKIIVE
AKPAVVVVNAVVGGYEALRMKERLAKVVDNVARLYQHGELAAEDEEGWEPCEVLLIDDHL
ASVYARSPRVKKEFTDYHDNLRIAIGMARQMQVRIPAPPFPSYLPPFTCLSPFFYPLQDP
LALVTLIYAAQDPRGGRFGGPGYQLSYLSLHDLQDQVNPHELSRRWEEVLVDAVNDVGVD
LNKSISSLHLAGLLPFVSGLGFRKANALRAAIRNTHGSLVVSRAQLIEEGLLTPKVYENA
AGFLRIRVPHLMGEDGVEEEDAMDLYEEEGSRRRGRKKKGRGEGRGERKVNLLDNTRIHP
ECYLTHEWVGKVIRDAMEQADPTMGINELVRLVMQDSFKILLATLCPPSEQGRPIDRLLV
AEIPDELASLNLEEFANYLENTGNGKHYQQMDQIKQELRFPFRDPRAPFRGISEDKLFEL
VSGETDATLRSGMPVTGRVWKVDENAARVRLDQCVVTGYLHRSRYPNMQRDMDFEAMVPV
DTPVEGVVTEIEKSRISVRISCLAEDLTARDWPRPPSLPPLDRHFDEARALKEYEERRRK
IEEKVRLAKEGKLRLSRRQRKVDDERWRTVNHLEAEKVLKQQGKVGEWLFRPSGSGSISL
SWLALEDLVLHIPVKEEEKEAGDAVGKKLTVQGRVYQELDQIVAQYIQPMNDLIDSVTSH
RKFRRMAKEQVEAELRASKKKHPSQR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgccactcgacgataaatgggaagaacttcaacgacgcaaatccttcgctttggcacgc
ttcgaacgtttttcagccggacatcacggttattcctcccgcaaggcaatggaccaagag
gcgcgaatagccgcccttcaggaggtggaggcacggttgaaagaggccgaggcaggcgtg
gaggagtggaaggagaaggaagaagacgagtttgcggaagaaagtgcctcccttccccag
gcgaaagaagccctggcctctttcactgaccaaaaggaggctgccttgaaggatcttgct
gctctagaggctgagatggaggccgcagagagggaaaaggagaagagagaaagtaacggg
cagtgggaagaattggagccggtggaggaggaggaggaagaggagctgcgtcgcctgtgc
ccagacagctaccggacgatgctagatgcctcccgggaggaggaaggggtccgagacctg
cacgagtacttgggtgtaattggccaggaaaccagccgacgggctcatcgacttgcattt
gatctctaccggaaatgccgctccttgaagggtttgcgccgatttgcgtcccttttcagt
tgcccggcaccggagcttggcgcagctttgcacgcaagtagcacgagtggaggggatttg
gacgaacagcaccgccccttaattcccaccccgaacatgtatcccgagaacgccgccgcc
gaatacacgaccccaagtctgcctaagtacgaagaagtccttcgggctgccaagcacatg
ctggccatggagcttgcccacgagcctcgcctccgcgcgtgcttccgacagatttaccgc
gccgaggcgactttgactacgcatcccactctcaagggccacaatgaaatcacggatcag
ttccaccggctccatggcttccaattcatcaacaagaagcccctctacgaattcttgcaa
cccccgagcgactcccagcccgacctcttcctcaggatcatgcaagctgagcgggaaggt
tttatcactttcaccatcgacgctcctgccaatacggccgctgaatcgaccagctggacc
ccgaatgggagctcggcctggcctagtcttctccaaaccttggagggactctatatgcct
taccgaacggcctctctcgacaccagccttgtggacgcctggaacgagcagcgaaaggat
attctctcgcttaccctttcttcccacatcttgcccatgttggaggcggaagtgaagcgg
gaaatggcgcgaaaagctcaagaagctgtcgttgctgctgcggcagatgctttgcgggaa
gtagtcaatacaggcacctacatgcctcaatataggaatatcaattgcgctctcatccca
ccattcgaggattttcagcttcggctctcccaacgatttcctttcgagctgacgcctttg
tcctcctcgtctctggaagtggtggccgtcttccaggcgtcctcgcgccaagaggcgtcc
ttcgctgtctccgtggggagagacggggcagtgcgggactatgtcatgctccctcctctg
cggtctggctacgacggcgacgctgaccagcgagataaactccagaagatcatagtagag
gccaagccggctgttgtggtggtaaatgccgtggtgggcggctatgaagctttgcggatg
aaagagcgtctcgccaaggtggtcgacaacgtggctcgcttgtaccaacatggagagcta
gctgccgaggatgaagaagggtgggaaccctgcgaggtcctcctgattgacgatcatctt
gccagtgtttatgcccgctctcctcgcgtcaagaaagaattcacagattaccacgataac
ttgcgaatcgccatcggcatggcgcgacaaatgcaggtccgtatccctgctccccccttc
ccttcgtatctacccccattcacctgcttgtctcccttcttttacccactccaggacccg
cttgctctggtcactctcatatacgctgcccaagatcctaggggagggcgtttcggcggt
cctgggtaccagctttcgtatctctctctgcatgacctccaggaccaagtgaaccctcat
gagctgtctcggcggtgggaagaggtgctggtcgacgcggtcaacgacgtgggggtggac
ttgaacaaaagcatctcgagccttcacttagccggtctgctccctttcgtttcggggctg
ggttttcgcaaggccaacgccttgcgtgccgccattcgaaacactcacgggagcctcgtg
gtatctcgagcccagctgatcgaggaaggactactcacgcccaaggtgtacgagaacgcc
gcgggtttccttcgcatccgggtccctcatttgatgggagaggatggggtggaagaggag
gacgccatggatctgtatgaagaagaaggcagtcgaaggagagggaggaagaagaaaggg
cgcggggagggccgaggggaacggaaggtaaatctcctggataatacacgcattcacccg
gaatgctacctaacgcatgaatgggtggggaaagtgattcgagacgccatggagcaggca
gacccaaccatgggcatcaacgaacttgttcgcttggttatgcaggattcattcaaaatc
ctcctcgccaccctctgccctccctcggaacaaggacggcccatcgaccgcctcctcgtc
gcggagatcccggacgagcttgcgagtctcaatttggaggagtttgcgaattacctggag
aacacgggaaatggaaaacactatcagcaaatggaccagatcaaacaggagctgaggttt
ccgttccgcgatcccagagcgcccttcaggggcataagcgaagacaagctgtttgagctt
gtctctggagagactgatgcgacgctccgatcgggcatgccggtgacgggtcgcgtctgg
aaggtggacgagaacgcggcgcgcgtccgcctggaccaatgtgtagtgactggctacttg
caccgctctcgctacccgaacatgcagcgagacatggacttcgaggcaatggtgcctgtt
gatacacccgtggaaggggttgtgacggagattgagaaaagccggatctccgtccgcatt
tcctgccttgccgaagacctgacggccagggactggcctcgccccccctcgctgcctccc
ttggaccgtcacttcgacgaagcgcgggccctgaaagagtacgaagagcggaggaggaag
atcgaagagaaggtccgtctggccaaggagggcaagctccgcttgtcgcgtcgacagcgc
aaggtggacgacgagcggtggcgcacggtcaatcacctggaggcagagaaagtgctcaag
cagcagggcaaggttggggaatggctttttcggccttccggttcgggttctatttccctt
tcgtggctggcgttggaggatttggtgttgcacattcctgtgaaagaggaggaaaaggaa
gccggagacgccgtcgggaaaaaattgaccgtgcaagggagggtttatcaggagctggac
caaatcgtcgcccaatacatccagcccatgaacgatctgatcgactcggtcacgtcccac
cggaagttccgacgcatggccaaagaacaggtggaagccgagttacgcgcgtcgaagaag
aaacatccgtcgcagcgatga
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integrated database retrieval system
