Nannochloropsis gaditana: NGA_0710500
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Entry
NGA_0710500 CDS
T02917
Name
(RefSeq) transcription initiation protein spt5
KO
K15172
transcription elongation factor SPT5
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
NGA_0710500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngd03021
]
NGA_0710500
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_0710500
Transcription machinery [BR:
ngd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
NGA_0710500
RNA polymerase I system
NGA_0710500
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
NGA_0710500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOWx_SPT5
KOW
Spt5-NGN
KOW2_Spt5
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
17360035
NCBI-ProteinID:
XP_005852736
LinkDB
All DBs
Position
Unknown
AA seq
511 aa
AA seq
DB search
MWRVKVKKNQEMPMVMSIMDMARRMTAKKQRVGITAAIFAGTKGHVLIEARNEADASAAI
RANSRFILSQRLEVVEYRYMATSLAVSEKVAPRPLRDGQWVRFKRGLYKGDLARVMAILE
GGSKVVIEMVPRINYEDMARNPRAGNIYVVSAASRPGPKFFSASEAREHEVVLHRGKIPG
LNMPCDVACNLHYMNGYLVKEVKPESLQAENINASVEEVTKFGLGALAEDDGRGHEERLQ
AAQREAEETQEQQRKNLRVFEQGDAVKVVAGELRNLVCRVLGSDPTTGTVSVRPVNPNLG
LPVKIELQASQLANHVEVGQHVKVLDGLFAGETGMVQALLSHDEHGAPVPEPIVSVLTDG
ENKELRVRLGQVKESADVATGMSSLSGYSLHDMVCYGYQRFGVIVWLGRESVKVLDSSGV
VQSVPLGELQGNRNRRSHQAAAYDSMNNRMQVEDQVLVTDRGEHFQKRGAIKHILGSSLW
IFTKQETRNSGLFVVRTRAVTLQNLIRKNAA
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgcgtgaaggtgaagaagaaccaggagatgcccatggtcatgagcatcatggac
atggcccggcggatgacagccaagaagcagcgggtcgggatcacggccgccatcttcgca
gggaccaaaggacacgtcctgatcgaggcccggaacgaagcagacgcttccgccgccatc
cgcgccaactcccggttcatcctttcccagcgcctggaggtggtggagtaccgatacatg
gccacctcgctggcggtctcggagaaggtggcgccccggcccttgcgggacgggcagtgg
gtccgcttcaagcgcgggctctacaagggggacctggcccgcgtcatggccatcctggag
ggcgggtcgaaggtggtgatcgagatggttccgcgcatcaactacgaggacatggcgcgg
aatccccgcgccgggaacatctacgtggtcagcgccgcctcccgcccggggcccaagttc
ttctccgcctccgaggcccgcgagcacgaggtggtcctgcaccggggcaagatccccggt
ttgaatatgccctgtgacgtggcctgcaacctgcactacatgaacggctaccttgtcaag
gaggtaaagccggagtcgctccaggcggagaacatcaacgcctcggtggaagaggtgacc
aagttcggcctaggggccctggcggaggatgatggaaggggccacgaggagcgtttgcag
gcggcgcagcgggaggcagaggaaacgcaggagcagcagcggaagaacctcagggtattc
gagcagggggacgccgtcaaggtggtggcgggcgagctccggaacttggtgtgccgagtc
ttgggctcggaccccaccacagggacggtctcggtgcggcctgtgaacccgaacctgggt
ctgcccgtcaagatcgagctgcaagcctcccagttggcgaaccacgtggaggtgggccag
cacgtgaaggtgctggacgggctctttgcgggggagacggggatggtgcaggccctcctg
agtcacgacgagcacggggcgccggtgccggagcccatcgtgtcggtgttgacggacggg
gagaacaaggagctgcgcgtgcgcctgggccaggtaaaggagagcgcggacgtggctacg
gggatgagctctctgtccgggtactctttgcacgacatggtgtgctatggctaccaacgg
ttcggggtgattgtctggctagggcgggagagcgtgaaggtgctggactcctcgggggtg
gttcagtccgtgcccttgggggagctgcaggggaaccgaaaccggaggagccaccaggcg
gcggcctatgatagcatgaacaaccggatgcaggtggaagaccaagtgcttgtcacggac
cgcggggagcacttccagaagcgcggtgcgatcaaacacatcctgggttcgtcgttgtgg
atcttcaccaagcaggagacgcgaaattcgggcctctttgtcgtccgcacgcgggcggtc
acgcttcagaatctgatcagaaagaacgcagcg
DBGET
integrated database retrieval system
