Nannochloropsis gaditana: NGA_2007900
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Entry
NGA_2007900 CDS
T02917
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NGA_2007900 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngd03041
]
NGA_2007900 (DHX38)
Enzymes [BR:
ngd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NGA_2007900 (DHX38)
Spliceosome [BR:
ngd03041
]
Complex C
Other components
Step II factors
NGA_2007900 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_23
nSTAND3
AAA_14
AAA_16
Sigma54_activ_2
T2SSE
AAA_7
Flavi_DEAD
AAA_30
ATPase
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
17361890
NCBI-ProteinID:
XP_005855115
UniProt:
I2CQU7
LinkDB
All DBs
Position
Unknown
AA seq
769 aa
AA seq
DB search
QRFWELGGSRMGQAMGLKEEGEEAKEGGAGASGEGPGKEEEEYDYRKESKFSEHLKDMKK
EGQSDFSRSKSMAEQRQYLPISTVRDELLTVIRENPIVIIVGETGSGKTTQMTQYLHEEG
FTDLGMVACTQPRRVAATTVAMRVADEMGVELGEEVGYSIRFDDCTSDKTLIKYMTDGIL
LRESLREPDLDSYAAIVMDEAHERSLNTDVLFGMLRKVAQRRRDLKLIVTSATLDSKRFS
DFFGGVPVFEIPGRTFPVERVYAKTSVEDYVDAAVKQALAIHLSHPPGDILVFMTGQEDI
ETVCEVIAERMMDLGTDRVPPLLLLPLFSNLSSDQQSKAFEATEKAVRKCVVSTNIAETS
VTVDGVKYVIDCGFSKLKVYNPSIGMDSLLVTPVAQANSDQRAGRAGRTGPGHCYRLYTE
RQYRDELLKTQVPEIQRTNLANVVLLLKSLGVTDLKEFDFMDPPPQENLQNSMYQLWILG
ALDNTGQLTTLGRKMAEFPIDPPLAKMLIVSHDLRCSEEVLIVVSMLSAPPVFFRPKDRA
EESDAKREKFFVPESDHLTHLNVYLQWKKNRYSAPWCTEHFLHAKSLKKAREIHGQLSDI
MQSQRMPLHAAGNSNWDRVRKAICSAYFYNSALMKGLGDYRNLLTGIPCHVHPTSALAGL
GYTPDYVTYHELVMTSKSFMQCITAIEPEWLAELGPAFFSLHESSTNRMARRREEKELKD
SMEAEMQAALKREEEEKAARKAAQVKETPKHVGSRMQTPGRWTPRRVGL
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
cagcggttctgggagttagggggaagtcgcatgggccaggcgatgggcctgaaggaggaa
ggtgaggaggcaaaggaagggggtgcaggtgcgtcgggtgagggtccggggaaagaggag
gaggagtacgactaccgtaaagagagcaaattcagcgagcatctgaaggacatgaagaag
gaggggcagagtgacttttcccggagcaaatccatggcagagcaacgacagtaccttccc
atcagtacggtgcgggacgaactgctgaccgtcatccgcgagaacccgatcgtcatcatt
gtaggcgagacgggctcggggaagaccacgcagatgacccagtacttgcatgaggagggt
ttcaccgacttgggaatggtggcatgcacgcagccccgccgcgttgccgcgaccacggtg
gccatgcgcgtcgcagacgagatgggggtggagttgggtgaagaggttgggtactcgatc
cgcttcgacgactgcacctcggacaagaccctcatcaagtacatgacggacggcattttg
ttgcgcgagtccttgcgggaaccggacctcgactcttacgccgccatcgtcatggacgag
gcccacgaacggtcgctgaacacggacgtgctattcgggatgcttcgtaaggttgctcaa
cgccgacgggacctgaagctcattgtcacgagcgccaccctggattcgaagcgcttctcg
gacttctttgggggggttcccgtcttcgagatcccgggacgcacgttcccggtggagcgc
gtgtacgcgaagacgtcggtggaggactacgtggacgcggccgtcaagcaggccctggcc
atccacctctcccacccccccggcgacatcctcgtcttcatgaccggccaggaggacatc
gagaccgtctgcgaggtcatcgcagagcggatgatggacttgggcaccgaccgggtgccc
cctctcctgcttctcccgctcttctccaacctgtcttcggaccagcagtctaaggccttc
gaggcgaccgagaaggccgtgcggaagtgcgtggtctccaccaacatcgccgagacgtcc
gtgacagtggacggggtcaagtacgtgatcgactgcggcttctccaagctgaaggtctac
aacccgagcattggcatggactccctcctggtcacacccgtggcgcaggccaactcggac
cagcgggcgggccgggcgggccgcacgggacccggacactgctaccgcctctacacggag
cggcaataccgggacgagctgctcaagacacaggtgcccgagatccagcgcacgaatttg
gccaacgtggtgctgctgctcaagtccttgggcgtgaccgacctgaaggaattcgacttc
atggaccccccgcctcaagagaacttgcagaactccatgtaccaactttggatcctgggc
gccctggacaacacagggcagcttacgacgctgggccggaaaatggccgagtttcccatc
gacccaccgctggctaagatgctcatcgtctcccatgatttgcgctgctcggaagaggtg
ctgatcgtagtctcgatgctctccgccccgcccgtcttcttccgacccaaggacagggcg
gaagagtcagacgccaagcgcgagaaattttttgtgcctgagtcggaccatctgacccat
ttgaatgtatatctacagtggaaaaagaatcgatacagcgcgccctggtgcaccgagcac
tttttgcacgccaagtccctcaagaaggcccgagagatccacgggcagctctccgacatc
atgcagtcccaacgcatgcccttacacgcggccggtaactccaactgggacagggtacgc
aaggcgatttgctctgcctacttttacaactcggcgctcatgaagggactgggcgactac
cgcaacctcctgacaggcatcccctgccacgtccatcccacctcagccctggctggtctg
ggatacacgcctgactatgtcacctaccacgagctagtcatgacctcgaagagcttcatg
caatgtatcacagccatcgagcctgagtggctggcagaactgggacccgccttcttctcc
cttcatgaaagttccaccaacaggatggcgcggcggcgagaggagaaggaactgaaggat
agcatggaggcagagatgcaggcagcgttgaagcgggaagaagaggaaaaagcagcacga
aaagctgctcaagttaaagagacgcccaaacatgtagggagccggatgcagacgccgggt
cggtggaccccccgccgcgtgggtttgtag
DBGET
integrated database retrieval system
