KEGG   Nannochloropsis gaditana: NGA_2061700
Entry
NGA_2061700       CDS       T02917                                 
Symbol
SNRNP40
Name
(RefSeq) Prp8 binding protein
  KO
K12857  Prp8 binding protein
Organism
ngd  Nannochloropsis gaditana
Pathway
ngd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ngd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NGA_2061700 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ngd03041]
    NGA_2061700 (SNRNP40)
Spliceosome [BR:ngd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    NGA_2061700 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    NGA_2061700 (SNRNP40)
SSDB
Motif
Pfam: WD40 Beta-prop_CAF1B_HIR1 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_DCAF4 DUF7165 WD_LRWD1 Cytochrom_D1 nos_propeller
Other DBs
NCBI-GeneID: 17363055
NCBI-ProteinID: XP_005856286
LinkDB
Position
Unknown
AA seq 356 aa
NTLGIYSMDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTG
HAAAVYCLQFNPMGDALATGSFDKTILLWDVYEDCKNYNVLAGHTNAVLDLKWSPNGCQI
ASASADKTLMLWDSNKGTRIRKCKEHTGCVNSVAVAGDKVAALIATASDDRTVKLWDNRS
RRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAKGPAPLDVLEGHSETVTGLS
LSPDGKYLLSNAMDNTVRQWDVRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSA
GSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG
NT seq 1071 nt   +upstreamnt  +downstreamnt
aatactttaggcatctatagcatggatgaaggccctgaggacgaggcaaggcggactggc
gccgatgatagcgccctggccacggttccggagagttccggcacgctggcaataagcagt
gctcccccagccccaggacggacgtcgcacttggccgcatctaccatgcttttgaccggt
catgctgcagccgtgtattgtctgcagttcaatcccatgggggacgctttggcaacgggg
tcttttgataaaacaatattgctgtgggacgtatatgaggattgtaaaaattacaatgta
ctggctgggcatacgaacgctgtgttggatctgaaatggtcgccaaatggttgccaaatc
gcttcggcatcggccgataagacgctcatgttatgggacagcaacaagggcactcggatc
cgtaaatgcaaggagcacactggatgcgtaaacagtgtggccgtggcgggcgacaaagtc
gcggcgttgatagccacggcaagcgacgatcgcactgtgaagctgtgggacaaccgcagc
cggcgatcggttcaaacaatcgagcatcgctttcagttgctggcggtagcgctgtccgcg
gatgggaaaaaggtgttcgcgggcggcatcgacaacagcatccaggtctgggacatggcc
aagggaccggctcctctagacgtgctcgagggccactcggagacggtcacgggcttgagc
ctgagtcccgacggcaagtatttgctgtcgaacgccatggacaacaccgtgcggcagtgg
gacgtgcggccctttgtgacgggagggcggctggtccaggtcttccaaggagggacacac
ggctcggatcgcaacctcttgcgctgcgcctggtcgcaagacggcgagatggtctctgcg
ggctccgcagatcgcgcggttcatgtatgggatgtgccttcgggtcaggagctctactac
ctgccgggacataaagggaccgtaaatgaggtcgtcttccatccccgggagcctgtgata
gcctctgcgtcttcggacaaaacgtgctatttgggggagcttgccggatga

DBGET integrated database retrieval system