Nannochloropsis gaditana: NGA_2076120
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Entry
NGA_2076120 CDS
T02917
Name
(RefSeq) serine threonine-protein kinase smg1
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
ngd
Nannochloropsis gaditana
Pathway
ngd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NGA_2076120
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ngd01001
]
NGA_2076120
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngd03019
]
NGA_2076120
Enzymes [BR:
ngd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
NGA_2076120
Protein kinases [BR:
ngd01001
]
Serine/threonine kinases: Other
PIKK family [OT]
NGA_2076120
Messenger RNA biogenesis [BR:
ngd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
NGA_2076120
mRNA cycle factors
Common to processing body (P body) and stress granule
NGA_2076120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PI3_PI4_kinase
HEAT_ATR
Motif
Other DBs
NCBI-GeneID:
17360488
NCBI-ProteinID:
XP_005853716
LinkDB
All DBs
Position
Unknown
AA seq
2711 aa
AA seq
DB search
AHSMSQTRVEDTSYDLSLDLARIRTAWLHAARRERNVGLCKELIQELESPTSSSLSPSSL
DWFLRVRYEEVQVNFLETNGIHQLGACIASLLVIASALLLSEPGLASVSSTRDPLAPSPL
VQLEGWEGSDTRMGKSGCSTDWLRLAKDSELSGLAKLLCSGEETRDRGKTEKMRRHWGYR
CLVRASQWLQQYHDQHRYASQSARFPFPGPSSALQQRTNKPWPAPAFEATCSSNTAPYAL
PSDTPSESVFAYDPPETQQPAPVRSHSLCDSSPPWFYALFFTHANSNAEELAGRCLELAA
QVVSPKSRQWGKAWRLWGDWLYRRAKALSTNQTTHDNARNPQQLERQKQIQLNAWKTHQN
SMPDLVQLSEELIKHENLEGNPSRARREAVQTLLMETILSEEREEDGLGEEGVLSVSAVK
KAGFERGGNNAALIARLREAIRRLRRERREARVQALEGSVDAYCRYLQVGEKSCTGLGDS
GYSALRALSALRILKMLARLPSASLQPSALMGTQLEPSTCCSSLLRRSLTAMPLNPWQAL
VPQLLIRLAILPEASFQSLLPLFERLVASAPQEIAWTLTVGCAELERSRTSQSFALSPIS
VSTPVHKQTKDMAVSVARARWLFLKSFLQERHPDLIQDVAVFTEALTSLGQLWDERWLVY
VSERWHVKGLQGRLRSLSREGERLARNPTLPESEKGRIVCERYAAMLLPLFVEAQTLAGE
TGCGMVDDKDGHQDFSGSPDASSSAHPSALEVHSSSPHNCAFAKKWRPRVMEVLALLQCA
PDTAAAMDPMSHVWPVLEKFKRDIITAVTGEEGRSRKKSGTDVEPGPTTQHQGRQLRAEA
VTPQLLSLLAKGNLQHVEMPGTTRPTFFYESQGRGVAVQMVGIGGHGIITVLKTKTRPKK
LSLLGSDGREYTYLLKGRDDLRLDERLMQLLVTVNSVLHVRAQTPRTEKCALGSAVLRGL
RARHYAVLPLSASAGLVQWVGGTTPLFSLYKNWRLRAVRGERLLLESQQQIQQAIHQREK
QQQQQVVQAQEEDSSIDIEKRGKRKKTTAERRERRKRQQDRERRPRLGEKGAEREISTER
ARKPLLWAPPATFEELEKGARRQKGRAAKTKKDSSTSGGSGTLPEPSVEDKSDNVKTSSR
ECSFHVSESRGNRGQHRVEEKEEEARDDEDENEEEDDLESAPAALFYAELVPELARQGLD
LRSTAASHRGEWPHSVLRTVYDRLMAQSPRHLLEVELVAGSLGAEDLWQRRQVLARSLAV
MSVLGAVLGLGDRHLNNLLWDGRRAELLHIDYTVCFDRGLRLRVPEVVPFRLTPVLVAAL
GPLGVDSGAFVNGMETVLRGLRGHKELLLSVLETLAHDPLVNWEDILGVRGNGGGGRGHQ
GPKQLHQHALDAIVTLKLVALRVGETRTLLRDRVLQIKKGFAALQALLDRVRNAREGWVA
EENEIFRSRPVLRDSKLLVEGTMLGQKRADLAGRLVSLQLQAEDQGRSALVLDASRRDLD
KALHKAAAQLKRRWEYQVWAVQQVLWKGQDRAMDGKEGKGLGREVDGVRLRSEDGRLVEK
VSSSLRNNIQRILLPANGSAKGAVYELERDEGDPFSIAPGLLGRGLQPQYCLLSRGASSL
LPPPVGEEECAYHDQFIEACRSEDARLGKYLRVLETALERVLEPMRAYSSLVRDTLSIEP
DEYVGRSLTRRWLRVVGAQQERMRLLIAFSSTMESSAAADSGGGDGGILPCGPSIAGWAM
VEAGPEEALEEVWPAWQRPRAGMKANEERLRRAEADTAWADNLQAALRVAVERREALVSE
ESCHRESEGRGTSFDARKRREQQDKDLEAAKDRLKVAVRALCKASNLAPISEGKRNHARL
HQVYEQRAMHRFLLERVVSPLDSTWGWMRSLENFEVEVASTPSNGVVDRRAGLVKEIQRR
LSHLEVLIKEVLVPGIGRVEEEIKRGNTGERLTALRTETLATLRRVYSLAERNEIQALVG
ALSRQERGGENCTAQGQVIEKENEHGSSFAEVTADAKLLYEAWQRGKEMVLDAVGKRAQQ
LVESELVGDADSLAASFSSLSLIDTLSLPASTRDAWTAWRKQVEDLEAACKALLASPSVS
TLPLRRLGMFVEGIFDRLEKADFWSQALRPPPFSAAARSDFVVEGVQGVPEYWPWLGEGT
ATSMLQLERILTTSQVMTVWMHQEESSGESGERGEIDSSHARTQGGRTEWRVAALDRLLA
DSMQRLLSITVGVPVRLATRSLVDRVMRVLGVSAPDLLERVASTREVQQVAAPHLVEVSP
RARWKSWIGAFDAYASSQATTAATQDVDSASAPYSAACQALATVSELVQSLAVQEASSLA
AAEAMRKAEEMESTLARSLTRLEWDLDGDFQVLAAAKSVGVRVLGAEGLLASSAIYVPHT
PPSQRRSFLLQCLAGAVVTLAQVLSVERSDLWDQAEEERGEEKAPASFLAPSTKGSDNVS
PPSFVSSFLSNARPASRDESSRHLDAWLKRKQDLMRLARGNKGSTNSGGRSLSSEEALVE
WDSKTKALVSCVEAASTGARAILLAAEGVLDFERSRVDMRGVEPGTDSQDAALWALVSQH
QGALAPVIEKRKAQAGCLREMGRAKADMAVLEREANAVDRRMVEMGERRRAWMEEEHVMQ
ADVRTSLRRLAAELRDCPSFCLSSPPTHPEPPPLPSAQEPSSRTWSSSTGSAGARLLDVG
MLKSIVRATQA
NT seq
8135 nt
NT seq
+upstream
nt +downstream
nt
tgcacattcaatgtcacagacaagagtggaagatacaagttacgatctcagccttgacct
agctcgaatcagaacagcctggttgcatgccgcccgtcgagaacgcaacgtaggactctg
caaggagcttattcaggagctcgagtccccaacgtcctcatctttgtctccctcttctct
tgattggtttttgagggtgcgttatgaagaggtgcaagtcaattttctggagaccaacgg
cattcatcagcttggtgcctgcattgcctctttgctggtcatagcctcggcgttgctatt
atccgaaccggggttagcgtctgtatcgtcaacacgtgacccacttgcccctagccctct
ggtccagctggagggttgggaaggaagcgacacgcgaatgggcaaaagtggctgtagcac
tgactggctaagactggcaaaggactccgaattgagtggattggcaaagttgctgtgctc
aggcgaagaaacccgtgatcgtggcaaaacggaaaagatgcggcgacattggggctacag
atgtttagtgcgggcatcgcagtggctacagcagtaccatgaccagcaccgatatgcttc
gcaaagtgcgcgctttccttttcctggcccgtcttcagctttgcagcagcggaccaataa
accatggcctgctcctgcttttgaagcaacctgttcctcgaacaccgctccttacgcttt
gccttccgatactccatctgagtccgttttcgcttatgatcctcccgaaacgcagcagcc
ggcaccagtacgatctcattctttatgtgatagttccccgccctggttctacgcgctttt
tttcacccacgccaatagcaatgccgaggagctcgctggacgatgcctggagcttgctgc
acaagtagtaagccccaaaagtaggcagtggggtaaagcgtggagattgtggggcgattg
gttgtaccgccgagccaaagctctgagcaccaaccaaacgacacatgataatgcaaggaa
cccacagcaattggagcgacagaagcagattcagctgaatgcgtggaaaacgcatcagaa
ctcaatgcccgaccttgtacagctgtcggaggaattaattaagcatgaaaatctggaggg
aaacccgtcgcgggcaagacgcgaggctgtgcagacgctgctgatggaaacaattttgtc
tgaggagagggaggaagacgggctgggcgaggagggagtcttgtcggtctcagcggtcaa
aaaagctgggtttgaacgtggggggaacaatgcggccttgatagcgcgcctgcgtgaagc
catacgacgcttacgacgggagcggagagaggctcgtgtccaggctctggaggggtcagt
ggatgcgtactgccggtacttgcaggttggggaaaagtcatgtacgggcctaggagacag
tggatactcagcgcttcgtgctctctcagcactacgcatcttgaagatgctcgctcgtct
tccctcggcatcattacaaccctcggctttaatgggtactcaattagaaccgagcacctg
ctgttcctctctcctccgccgttcactgactgcgatgcctctgaatccttggcaagctct
ggtgccgcaactcctgatacggctggcaatcttaccagaagcctccttccagtcgctgct
ccccctattcgagcgtctggtagcatctgccccccaagagattgcgtggacactaactgt
tggctgcgcagagctagagaggtcgaggacatctcaatcgtttgctctttcaccaatttc
cgtcagtacccctgtccataagcaaaccaaagatatggcagtgagtgtcgctcgtgcgcg
ttggctctttctgaaaagttttttacaagaaaggcaccctgacctcattcaggacgttgc
ggtcttcacggaagctctgacctcgctcggtcagttgtgggatgagcgctggcttgtata
cgtgagcgagcgttggcacgtgaaggggctgcaggggcgcttacgaagcttgagtcgcga
gggagaacgtttggcgcgtaatccgacgctgccggagtcggagaaaggtcgcattgtctg
cgagaggtatgccgcgatgctgttgccactctttgtcgaggcacagactcttgcgggcga
aacaggctgcggtatggtcgatgacaaagacggacaccaggatttctcaggttccccgga
tgcctcgtcgtccgctcaccccagtgccctcgaggtgcattcgtcttcacctcataactg
tgcctttgccaaaaaatggcgtccccgtgtgatggaggtactcgctctgctccaatgcgc
tccagatacggctgcggccatggacccgatgtcccacgtctggcctgtcctggagaagtt
taaacgtgacattattactgctgttacaggggaggaaggaaggagtagaaagaaaagtgg
aacggatgttgaaccgggacctaccacacagcatcaaggccggcagctcagagccgaagc
ggtgactccacaattgctctcccttcttgcgaaagggaacttgcagcatgtagagatgcc
tggcaccacacgtccgacttttttttacgaaagccaggggagaggagtggctgtgcaaat
ggtcgggattggggggcatggtattatcactgtgctcaagaccaagacccggccaaagaa
gctcagcctgctcggctcggatggaagggagtatacctatctgctgaagggtcgcgatga
tctgcgattggatgagcgcctcatgcagctgctggtgaccgtcaatagtgtcctccacgt
ccgtgcacagacgccgcgcacggagaaatgtgcgctcgggagcgctgtgttgagaggcct
tcgtgctcgacactatgcggtcctgccgctctcggcgtcggccgggctggtgcagtgggt
ggggggcaccacgcccctttttagcttgtacaagaactggagacttcgtgccgtgagggg
tgagaggcttctgcttgaatcccaacagcagattcaacaggcgatacaccagcgagagaa
acaacaacagcagcaagtggtacaggcacaagaggaggacagctccatagacatagaaaa
gcgaggaaaacggaagaaaacgacagcagagcgtcgcgaacgccgcaagcggcagcagga
tcgagagcgtcgaccgcggctcggtgaaaagggagcggagagagaaattagtaccgagag
ggccaggaagccattactctgggcccctcctgccactttcgaggagctggaaaaaggagc
gcgacgacaaaagggaagggctgcgaagacgaagaaagattcatcgacctctggtggatc
tgggacgttgcccgagccaagtgttgaagataagtctgacaatgtcaagacaagctcaag
ggaatgcagcttccatgtcagcgagtcacggggaaatagggggcagcatagagtagagga
gaaggaagaagaggctagggacgacgaggacgaaaatgaggaagaagacgatctagaaag
tgctccagcggccttattctacgcagagctggttcccgaactggctagacagggattgga
tctgagatctactgctgcctcccatcgaggcgaatggccgcactcagtcctgcgcacagt
gtatgatcgtttgatggctcaatctccacgccatctgttggaggtagagttggtggcagg
ctcactaggcgccgaagatttgtggcagcgacggcaagtcttggcgcgctccctcgccgt
catgtctgtactcggggccgtgcttggcttgggtgaccggcatctgaacaacctcttgtg
ggacggacggcgagctgagcttttgcacatcgactacacggtctgcttcgaccggggcct
gcgcttgcgggttcccgaggtggtgcccttccgtctgacgcctgtcttggttgcggccct
ggggcctctgggtgtggacagcggggcatttgtaaatgggatggagaccgtgctgcgagg
tttgcgaggacataaagagctgctattgtcggtgctggagactttggcgcacgacccact
tgtgaactgggaggacattttgggggtaagaggtaatggaggaggcggcagagggcacca
ggggccgaaacaattgcatcagcacgccctagacgccatcgtcactttaaagcttgtcgc
tctgcgagttggggagacgcggacattgctccgagaccgagtcctgcaaattaaaaaggg
gttcgctgcccttcaggctcttttggaccgcgttcgaaacgcccgggaagggtgggtcgc
agaagaaaatgagatctttcgttcacgccctgttttgagagactccaaactgctcgttga
gggcaccatgctgggacagaagcgtgctgacctagcggggaggctcgtatcattgcagct
ccaggcggaagaccagggccgatcagctctcgtcctcgatgcctctcgtcgagacctaga
taaagcactccataaagcagcggcacagctgaaacggagatgggaatatcaagtatgggc
ggtgcagcaggtgctttggaagggacaggatagggcgatggatgggaaggaaggaaaagg
gctgggcagagaagttgacggggttagactacgtagtgaggacggacgcttggttgagaa
ggtgagcagctcattgcggaacaacattcaacgcatcctcttacccgccaatggatcggc
caaaggagcagtctacgagcttgagagagacgaaggcgatccgttctccattgctcctgg
gcttctaggccggggtctgcagccgcagtattgccttttaagcaggggagcctcaagcct
gcttcccccaccagtcggtgaagaagagtgcgcctaccacgaccaatttatcgaggcctg
tcgatccgaggacgctcgattgggcaagtatttgcgtgtcttggaaacagccctcgagcg
ggtccttgagccaatgcgcgcttattccagcctcgttcgtgacaccttaagtatcgaacc
cgacgagtacgttgggaggagccttactagaagatggttgagggtggtgggggcccaaca
agagcgcatgcggctcctgattgccttttcgtctacgatggagtcctctgccgcggccga
tagcggaggcggggacgggggcatccttccttgtggtccgtctattgcaggttgggcgat
ggtcgaagcagggcctgaagaggcattggaggaggtctggccggcatggcagcggcctag
ggcaggcatgaaggcgaacgaggaacgtcttcgtcgcgcagaggccgatacagcttgggc
tgacaatctccaggcggcgctgcgcgtggcagtggagcggcgtgaggccctagtgagtga
ggaaagctgccatagagaatcagaaggacgaggaacttcattcgatgcacggaaacgtcg
agagcagcaggataaagatctggaggcagctaaagacaggctcaaagtggcggtgcgggc
cctttgtaaggcgagcaatttggccccgatatcggagggcaagcgcaatcatgctcggct
gcatcaagtatacgagcagcgtgccatgcatcgcttcttgctggaaagggttgtgtcgcc
ccttgactcaacgtggggatggatgagaagcctggagaatttcgaagtggaagttgcctc
tactccttccaacggtgtcgtcgatcgacgcgccgggctcgtaaaggaaatacagcggcg
gctctcgcatcttgaggtactcatcaaggaggtgcttgttcctgggatcgggcgggtgga
ggaggaaatcaaacgagggaatacgggcgagcgactgacggccttgcggacagagacttt
ggcaacgctccgacgcgtgtacagcctggcggaaagaaatgagattcaagccttagtggg
cgctttgtctcgacaggaaagaggaggggaaaattgcaccgcccaaggacaagtgataga
aaaagaaaatgagcacgggagctctttcgcggaagttaccgcggatgcaaagcttttgta
cgaggcgtggcagagagggaaggaaatggtgctcgacgcggttggcaagcgagcgcaaca
gcttgttgagagtgagctcgttggggacgcggactctctggccgcctctttttcatccct
ctccctcatcgatacactttccctcccagcgtctacacgcgacgcctggacagcgtggcg
aaagcaggtggaggacctggaggctgcgtgcaaagcactccttgcctcccccagtgtctc
caccttgcctctgcgtcgtctggggatgttcgtggaagggatcttcgatcgtttggagaa
ggcggatttttggtcgcaagccttgcgccctccccccttctcggccgccgcgcggtcgga
ttttgtggtcgagggcgtacaaggcgtgccggagtactggccctggctgggtgaagggac
ggccaccagcatgctgcagcttgagcggattctaacgacttcacaggtgatgacagtgtg
gatgcaccaagaagaaagcagtggggaaagtggagagaggggggagatagactcgagcca
tgccaggacacaaggcgggcgaactgagtggagagtggcagccctggacaggcttttggc
cgacagcatgcagcgtctgctgagcataaccgtgggcgtgccggtgcgcctagcgacccg
cagccttgtggaccgcgtgatgcgagtgctgggagtgtccgcgccagacttgctggaacg
cgtggcgtcgaccagggaggtacaacaggtcgcggcacctcacttggtggaagtgagtcc
ccgtgcacggtggaaaagctggatcggcgcctttgatgcttatgcttcgtcgcaagccac
tacagccgccacacaggatgttgatagcgccagtgcaccttattctgcggcatgccaggc
attggcgacagtgtctgaactggtgcaatcgctggccgtgcaggaagcctcatcgttggc
tgcggccgaagcgatgaggaaagccgaagagatggaatcgacgcttgctcgctccctcac
gcgcttagagtgggacttggacggcgacttccaggtgttggccgccgcaaaaagtgtggg
cgtgagggttctgggtgcagagggtttgctcgcctcttccgcaatctacgtgccgcacac
tcctccctctcagcgtaggagcttcttgctgcagtgcctcgctggcgcggtggtaactct
ggcgcaggtcttatccgtggagcgatctgatctgtgggaccaagcggaggaagagcgagg
ggaagagaaggcccctgcaagcttcctggcaccttccaccaaaggctcggacaacgtttc
tcccccttcctttgtctcgtcgtttttgtcaaatgcgcgtcctgcgtcgcgagacgagag
ttccaggcaccttgacgcatggctgaagcggaagcaggatctgatgcgcctcgcccgggg
caacaaaggctcgacaaattccgggggccgctccctgtcctcggaggaggcgctggtcga
atgggactcgaagaccaaggccctcgtatcctgcgtagaggcggcgagcacaggggcccg
ggccatcctcttggcggccgagggggtcttggattttgagcgatcgcgcgtggatatgcg
gggcgtggagcccggcacggactcgcaggacgcagcgctttgggccctcgtttcccaaca
ccaaggcgccttggcgcccgtgattgagaagcgcaaagcccaggctggctgtttgcgtga
gatgggccgggccaaagcagacatggcggtcttggaaagagaggcgaacgcggtggaccg
gcggatggtggagatgggagaaagacgccgtgcttggatggaagaggaacatgtaatgca
ggcagacgtcagaacaagcctgcgtcgattggcggcggagctccgcgattgcccgtcttt
ctgcttgagctcccctcccacacaccccgagcctccccccctcccatccgcacaggagcc
ctcgtctcgcacctggtcctcctcgacgggttcggcgggcgcccgcctcctggacgttgg
gatgctgaaatccatcgtccgggccacgcaggcct
DBGET
integrated database retrieval system
