Natronobacterium gregoryi: Natgr_2730
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Entry
Natgr_2730 CDS
T02383
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nge
Natronobacterium gregoryi
Pathway
nge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Natgr_2730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nge03019
]
Natgr_2730
03016 Transfer RNA biogenesis [BR:
nge03016
]
Natgr_2730
Enzymes [BR:
nge01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Natgr_2730
Messenger RNA biogenesis [BR:
nge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Natgr_2730
Transfer RNA biogenesis [BR:
nge03016
]
Prokaryotic type
tRNA degradation factors
Natgr_2730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_Tnp_2
Motif
Other DBs
NCBI-ProteinID:
AFZ73879
UniProt:
L0AK96
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All DBs
Position
complement(2658566..2659876)
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AA seq
436 aa
AA seq
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MSDDTDTDAQAEAGTAEGQGSVEISEDLARHLENKREELFEKFEIPDGFPPEVLEEAEER
TEGVQAEIREEVDEREDLRDLTTWTTDPIDAQDFDDALSIEERDDEYVLWVHIADVTHYV
NPDTAMWRSAVERSNTVYLPGYTIHMLPPVLAETVCSLVPNEDRLAHTVEMHLDKENLGY
ESIDIYKSVIRSDERLTYSQAENRLDDPDAPLHEENKLVHKLADRMHEQRKEDGSLVLNP
ARDRAHTIIEECMLKANKAVTHTLMWDRGVEAMYRVHPQPSPDEWSEALQEIQDLDGVSI
PGSTWDDPRKAVNATLEEAPGRQLDKIQWAVMKVMPRAKYMNDPFGGHHALNFEIYGHFT
SPIRRLSDLINHWIVYQNDVPENLVELCDRASDKQKDAEQCEREYKGFLEEVGLDPMAVN
NRGIEVVDDDEAEKTL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacacagatacagacgcccaggccgaagccggcacggcggaaggccagggc
tccgtcgagatctccgaggacctcgcgcgtcacctcgagaacaaacgcgaggaactgttc
gagaagttcgagattcctgacggcttcccgccggaggtactcgaggaggccgaagaacga
accgaaggcgtccaagccgagattcgggaggaggtcgacgagcgtgaggacctccgcgat
ctgacgacgtggacgacggacccgatcgacgctcaggacttcgacgacgcgctctcgatc
gaagaacgcgacgacgagtacgtgctctgggtccacatcgccgacgtgactcactacgtc
aatcccgacaccgcgatgtggcggtcggccgtcgagcgcagtaataccgtctacctgccg
gggtacacgatccacatgctgccgccggtgctcgccgagacggtctgttcgctggtcccc
aacgaggaccgcctggcccacaccgtcgagatgcacctcgacaaggagaacctgggctac
gagagcatcgacatctacaagtcggttatccgctccgacgagcgactcacctactcgcag
gccgagaaccgactggacgaccccgacgcgcccctccacgaggagaacaaactcgtccac
aaactcgccgaccggatgcacgaacagcgaaaggaggacggctcgctcgtgctcaacccc
gcccgcgaccgtgcccacaccatcatcgaggagtgcatgctgaaggcgaacaaagccgtc
acgcacacgctgatgtgggaccgcggcgtcgaggcgatgtaccgcgtccacccacagccg
agtccggacgagtggtccgaagccctccaggagattcaggacttagacggcgtctccatc
cccggcagcacctgggacgatccccggaaggcagtcaacgcgaccctcgaggaggcccct
ggccgccaactcgacaagatccagtgggccgtcatgaaggtgatgccccgtgcgaagtat
atgaacgatccgttcggcggccaccacgcgctgaacttcgaaatctacggccacttcacc
agccccattcgccgcctctcggacctgatcaaccactggatcgtctaccagaacgacgtc
cccgagaacctcgtggaactgtgtgaccgcgcgagcgacaagcagaaagacgccgagcag
tgcgaacgcgagtacaaagggttcctcgaggaagtcgggctcgatccgatggcggtcaac
aaccgcggcatcgaagtcgtggacgacgacgaggccgagaagacgctatag
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