Novosphingobium ginsenosidimutans: FRF71_00435
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Entry
FRF71_00435 CDS
T06189
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03030
DNA replication
ngf03430
Mismatch repair
ngf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRF71_00435 (dnaE)
03430 Mismatch repair
FRF71_00435 (dnaE)
03440 Homologous recombination
FRF71_00435 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngf03032
]
FRF71_00435 (dnaE)
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_00435 (dnaE)
Enzymes [BR:
ngf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FRF71_00435 (dnaE)
DNA replication proteins [BR:
ngf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FRF71_00435 (dnaE)
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FRF71_00435 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
HHH_3
COE1_HLH
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
QEA14714
UniProt:
A0A5B8S0P4
LinkDB
All DBs
Position
complement(93176..96661)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAHERFVPLRVFSSYTMLDGTIDPKAAAKLAKDRAFPAIAITDRNGLYGAMSFAGACKDA
GIQPLIGTFLAVSREEAAAGKDPVIDWLGLIAQNETGWNNLCYLVSRAHLGRPIEFEPHV
TMADLQGHTDGLIALTGAGEGALVRLLAAGKGEAAVEFCARLEGLFPGRLYLEVARRNDP
TEEAAEDALIDLAYARDLPLVATNPANFADPGGHAAHDAMLCIANSTHVDAPDRPRSPRE
SWLKSGPMMRELFADLPEALANTLVIAQRCAFSPPKRKPLLPSLAGDKEGEARMLIEHAR
AGLEKRIAPYGELPEEERQAYFDRLDFETDVINRMGFAGYFLIVADFIQWAKANDIPVGP
GRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQA
KYGADHVAQIITFGKLKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWSLPRALNGV
AELKREYDNDPEVKRLVDLAVQLEGQPRNSSTHAAGVVIGDRPLDQLVPLYRDPRSDMPV
TQFDMKYVEDTGLIKFDFLGLKTLSVLKKAVELLKRREIAIDLETLPWDDAEVYELLQRG
DTVGVFQLESEGMRRTLAAVKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGSESIEYPH
PKLEGILSETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRSRFVSG
CKEHSEIEPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAASMCF
DMHQSEKLAIFVDDMRRNGVALAGPDINRSEAEFTVERTDEGHAVRYALAGIRNVGEKAM
DAIVAEREANGRFATLEDLFRRVPQGSMNRRQLEGLAGAGAFDSLEPNRAKVLANADMLL
AVADEAERTRSSGQAGLFGGEDHAAPSLRLAETTPWPRAEQMAKERENFGFYFAAHPVEQ
WRAVATANGARTYAALMETGVPGGGRMQAMMAVMVESVSKGRTRRGGEFVRADFSDSSGQ
FSAACFEESLVEPMQAWAKDGTCLLLTVELDAPSPDEPPRVTVRGARPLEEVKGSAQMQL
RLDVLNPQAVHDLAALLGPDGTGTGEVLVRLRTGHGLEPVLRLGRQFHLDSEVAERLASV
EGLANVALTARRGAGHLRLVA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcccacgaacgttttgtcccgctgcgcgtcttttcgagctacaccatgctcgacggg
acgatcgatcccaaggcggcggcgaaactggccaaagaccgcgcctttccagccatcgcc
attaccgatcgcaacgggctttacggcgcgatgtcctttgccggggcctgcaaggatgca
ggcatccagccgctgatcggtaccttcctggccgtgtcccgcgaagaggctgccgcgggg
aaggatccggtgatcgactggctgggcctgatcgcccagaacgagactggctggaataac
ctctgctacctcgtcagccgcgcccatctcggccggccgatcgagttcgaaccccacgtc
accatggccgatctccagggccacaccgacggcctgatcgcgctgaccggggcaggcgag
ggcgcactggtgcgcctgcttgcagcaggcaaaggcgaggcggctgttgaattctgcgcg
cgccttgaagggctgtttccaggacggctttacctggaggtcgcccgacgtaacgatccg
actgaggaagcggccgaagatgcgctgatcgacctggcctatgctcgcgatctgccgctg
gttgcgaccaacccggcaaacttcgccgatccaggcggtcacgccgcgcacgatgccatg
ctctgcatcgccaattcgacccacgtcgatgcgcctgaccggcctcgctcccctcgcgaa
tcctggctcaagtccgggccgatgatgcgcgagctgttcgctgacctgcccgaggcgctg
gccaacaccctggtcatcgcccagcgctgtgccttctccccgcccaagcgcaaaccgctg
ctgccaagcctggcgggggacaaggaaggcgaagcgcggatgctgatcgagcacgcccgc
gcgggcctcgaaaaacgcattgcgccctatggcgagctgcccgaggaggagcgccaggcc
tatttcgaccggctcgacttcgaaaccgacgtcatcaaccggatgggctttgccggttac
tttctgatcgtggccgacttcatccagtgggccaaggccaacgacatcccggtcgggccg
gggcgcggttcgggcgcgggttcggtcgttgcctgggcgctgaccatcaccgatctcgat
ccgctgcggctgggcctgctgttcgaacgcttcctcaacccggaacgcgtctcgatgccg
gacttcgatatcgacttttgcgaaacccgccgcggcgaggtgatccgctatgtccaggca
aagtatggcgccgatcacgtcgcccagatcatcaccttcggcaagctcaaggcccgtgcc
gtgttgcgcgactgcggccgcatcctgcagatgagctatggccaggtcgaccgtctctgc
aagatggtcccgaaccacccgaccgacccgtggagcctgccgcgcgcgctcaacggcgtg
gccgagctcaagcgcgaatacgataacgatcccgaggtgaagcggctggttgacctggcc
gtccaactcgaaggccagccgcgtaatagctcgacccacgcggctggcgtcgtgatcggc
gatcgcccgcttgaccagttggtcccgctttaccgcgatccgcgctctgacatgccggtg
acccagttcgacatgaagtatgtcgaggacaccggcctcatcaagttcgacttcctcggc
ctgaagacgctgtcggtgctgaagaaagcagtcgagctgctcaaacggcgtgagatcgcg
atcgatctcgagacgctgccatgggacgatgccgaagtctatgaactgctccagcgcggt
gacacggtcggcgtgttccagctcgaatccgaagggatgcggcgcaccctagcggcggtc
aagccgaccaacttcggcgatatcatcgcgctggtctcgctctaccggcctggcccgatg
gacaacatcccgctgttcggccgtcgcaagaacggcagcgaatccatcgagtacccgcat
cccaagctcgaaggcatcctgtccgagacctacgggatcttcgtgtaccaggaacaggtc
atgcaggccgcgcagatcctggccggctactcgctcggcgatgccgacctcttgcgccgc
gccatgggcaagaaggtccaggccgaaatggacgcccagcgctcgcgcttcgtgtcgggc
tgcaaagagcattcggagatcgaacccgccaaggccaacgaactgttcgatttgatcgac
aagttcgccggctatggcttcaataaaagccacgcggccgcctatgccctgctggcctac
cagaccgcgtggctgaagacccattacccgcacgaattctatgccgcctcgatgtgcttc
gacatgcaccagtcggaaaagcttgcgatcttcgtcgatgacatgcggcgcaatggcgtt
gccctggcaggaccagacatcaaccgctctgaggccgagttcacggtcgagcgcaccgac
gaaggccatgccgtgcgctatgccctggcgggaatccgcaatgtcggcgaaaaggcgatg
gatgcgatcgttgccgagcgcgaggcaaatggccgcttcgctacccttgaggacctgttc
cgccgtgtgccgcaaggttcgatgaaccgtcgtcagttggaaggattagccggggccggg
gcctttgacagccttgaacctaaccgcgcgaaggtgctggccaatgccgacatgctcctg
gccgtcgccgatgaggctgagcgcacccgttcgagcgggcaggctgggctgtttggcggt
gaggatcatgctgcgccttcgctgcgcctcgccgaaacgactccctggccgcgcgcggag
cagatggccaaggaacgcgagaattttggcttctacttcgccgcgcatcccgtggagcaa
tggcgcgccgttgccacggccaatggcgcgcgaacctatgccgcgctgatggaaaccggg
gtgcccggcggtgggcggatgcaggcgatgatggccgtgatggtcgaaagcgtcagcaag
gggcggacgcgcaggggcggcgaattcgtccgcgctgacttttccgatagctccggccag
ttcagcgccgcctgtttcgaagaatcgctggttgagccgatgcaggcctgggccaaggac
ggtacctgcctgctgctgacggtggaacttgacgcgcccagtccggacgagccaccgcgc
gttaccgtgcgcggcgcacggccgctggaagaggtcaagggttcggcgcagatgcaactc
cggctcgatgtgcttaacccgcaagcggtgcatgacctcgccgcactgctcggcccggac
ggcacgggcactggcgaggtgctggtgcggctgcgcactgggcatggcctggaaccggtt
ttgcggctcggccgtcaattccatctcgacagcgaagttgctgaacgcttggcaagcgtc
gaaggtcttgccaatgtggccttaaccgcaaggcgaggagcagggcacctgagactcgtc
gcctaa
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integrated database retrieval system
