Novosphingobium ginsenosidimutans: FRF71_04575
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Entry
FRF71_04575 CDS
T06189
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRF71_04575 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngf03019
]
FRF71_04575 (recQ)
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_04575 (recQ)
Enzymes [BR:
ngf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRF71_04575 (recQ)
Messenger RNA biogenesis [BR:
ngf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRF71_04575 (recQ)
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FRF71_04575 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QEA15467
UniProt:
A0A5B8S447
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All DBs
Position
909850..911628
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AA seq
592 aa
AA seq
DB search
MTRDALLDQLHTTFGFSAFRGVQEQVLARVMAGQSTLAIMPTGAGKSLTYQLPAVMLAGT
CVVVSPLIALMHDQLRAATANGIRAATLTSADMDRAETIERFRAGTLDLLYVAPERASQP
HFRELLTTAPLSLFAIDEAHCVSEWGHDFRPDYRLLRPLMDAFPDVPRLALTATADRHTR
ADVLTQLGIGEDGLIVAGFDRPNIRYAIRHRDSLLQQLKTLLAEQPGPGIVYAPTRKKVE
ELAEKLSAATGRPVLPYHAGLDPQVRSANQAAFVASEDMVMVATVAFGMGIDKPDVRFVA
HAGIPKSIEGYYQETGRAGRDGDPAVALMLWAAEDFARARHRLAEVEEHRQAGERTRLDA
LAALVETGACRRAVLLRHFGEDPPQTCGNCDNCLDAPGIVDVTELARKLLSAVYRTGQTY
GFGHVEKVLLGQEDERVTARGHDRLSVFGIVGSDEAPLLKPLMRALQARGSLVPTEHGGL
ALGGDARDVLKGEAAVLIALQPRRERSGRSGRRERGAVNPVGNPLFEALRELRRSLAAEA
GVPPYVIFHDATLREMAETRPANLAQLGEVGGVGSRKLAAYGEAFLATIRQY
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcgcgacgcccttcttgaccagctccacaccaccttcgggttcagcgcctttcgc
ggggtgcaggaacaggtgctggcccgcgtcatggccgggcaatcgaccctggcgatcatg
ccaacgggcgcaggcaagtcgctgacctaccagctcccagccgtgatgctcgcggggacc
tgcgtggtggtctcgccgctgatcgcgctgatgcatgatcagctgcgcgccgcgaccgcc
aacggcattcgcgccgccaccctgaccagcgccgacatggaccgggccgagacgatcgag
cgcttccgggccggcacgcttgacttgctttatgtcgcccccgagcgtgccagccagccg
cattttcgcgagctgctaaccaccgcgccgctcagcctcttcgccatcgacgaggcgcat
tgcgtttcggaatggggccacgatttccgcccggactaccggctgctgcggccgctgatg
gatgcctttccggatgtgccgcgcctggctctgaccgccactgccgaccggcacacccgc
gcggacgtgctgacccagctgggcattggtgaggatggactgatcgtcgccgggtttgac
cggcccaatatccgctatgcaatccgccaccgcgacagcctgctccagcagttgaagacg
ctgctggcagagcagccaggcccggggatcgtctatgcgcccacgcgcaagaaggttgag
gagttagccgagaagctgagtgccgcgaccggccgcccggtgctgccctatcacgccggg
ctcgatccacaggtccgcagcgccaaccaggcggccttcgtcgccagcgaagacatggtg
atggttgccacggttgcttttggcatggggatcgacaagcccgacgtgcgctttgtcgcc
catgccggcatccccaagtcgattgagggctattaccaggaaaccggccgtgctgggcgc
gatggcgatccggccgtggcactgatgctgtgggcggcggaagactttgcccgcgcgcgc
caccgcctggctgaggttgaggaacaccgccaggcgggtgagcgtacgcggctcgatgcg
ctggccgcgctggtcgagaccggggcctgccgccgcgccgtgctgctgcgccacttcggc
gaggacccgccgcagacctgcggcaactgcgacaactgccttgatgcgcccggcatcgtc
gatgttaccgaactggcccgcaagctgctctcggccgtctatcgcaccggccagacctat
ggcttcggccatgtcgagaaggtgctgctggggcaggaggacgagcgggtaaccgcgcgc
gggcatgaccggctgtcggtcttcgggatcgttggcagcgatgaggcgcccttgctcaag
ccgctgatgcgggcgctgcaggcgcggggcagcctggtcccgaccgagcatggcgggctg
gcgctgggcggcgatgcgcgcgacgtattgaagggtgaggccgctgtcctgatcgcgctg
cagccgcgccgcgagcggtctgggcgcagcggccggcgcgagcgcggcgcggtcaatccg
gttggcaacccgctgttcgaagccttgcgcgaactgcgccgctcactcgcggctgaggcc
ggggtgccgccctatgtcatcttccacgatgccaccttgcgcgaaatggccgagacccga
cccgccaaccttgcccagctgggcgaagtcggcggcgtcgggtcccggaaattggcggcc
tatggcgaggcgttcctcgccaccattcgccagtactga
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