Novosphingobium ginsenosidimutans: FRF71_04640
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Entry
FRF71_04640 CDS
T06189
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ngf
Novosphingobium ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
FRF71_04640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngf03019
]
FRF71_04640
03009 Ribosome biogenesis [BR:
ngf03009
]
FRF71_04640
04131 Membrane trafficking [BR:
ngf04131
]
FRF71_04640
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngf04147
]
FRF71_04640
Messenger RNA biogenesis [BR:
ngf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
FRF71_04640
Ribosome biogenesis [BR:
ngf03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
FRF71_04640
Membrane trafficking [BR:
ngf04131
]
SNARE
SNARE associated proteins
Others
FRF71_04640
Autophagy
Aggrephagy
Other aggrephagy associated proteins
FRF71_04640
Exosome [BR:
ngf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
FRF71_04640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
AAA_5
CDC48_2
RuvB_N
AAA_22
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
nSTAND3
AAA_28
NPHP3_N
RNA_helicase
AAA_18
AAA_7
Mg_chelatase
Sigma54_activat
AAA_3
Zeta_toxin
ABC_tran
AAA_30
AAA_24
TsaE
DUF815
AAA_19
AAA_17
AAA_11
Parvo_NS1
Vps4_C
NB-ARC
Viral_helicase1
bpMoxR
ATPase
ResIII
ATP-synt_ab
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
QEA15479
UniProt:
A0A5B8S1U3
LinkDB
All DBs
Position
complement(920760..923087)
Genome browser
AA seq
775 aa
AA seq
DB search
MADKDPASVTADAGTRAVRLQVAAARQEESGQGIARLPKATMGRLGITEGDIVSIEGKRS
TAARAVLAYAEDEGLEVIRLDGLQRANAGVGSGDHVQVDRAESRPATRVVFAPAQQDMRL
QGPGQALKRNFFGRPLVAGDLVATTGQTPVRDMPPQVARMLNAPAFALTQIRLTVVSTSP
KGIVHIDENTEVELREEYEEARGSRGEVNYDDVGGMGDTIQQLREMVELPLRYPELFTRL
GVDPPKGVLLHGPPGTGKTRLARAVANESEASFFTINGPEIMGSAYGESERRLREVFEEA
AKSSPSIVFIDEIDSIAPKRSQSPGEAEKRLVAQLLTLMDGLHARSHIVVIAATNRPDAL
DEALRRPGRFDREIVIGVPDESGRREVLGIHTRGMPLGDGVDLDELARTTHGFVGADIAA
LAREAAIEAVRRIMPQLDLEAQTIPPEVLEKLVVTRDDFLAALKRVQPSAMREVMVQVPN
IGWADIGGADEAQEKLKEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAK
ESEANFISVKSSDLLSKWYGESEQQLSRLFARARQVAPCVIFIDEIDSLVPARGTSGNEP
QVTARVVNTMLAEMDGMEELASVVLIGATNRPGLVDPALLRPGRLDELVYVGTPDAKGRE
HILKIHTGKMPMASDVDLGAIAREAERFTGADLEDVVRRAGLNAIRRAGADAAEVNGADF
REALADSRATVSAEMETEYLKMKGELKKRAAEVTSTQIGFLAPGMVQSTRERKHD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaggatccagcaagcgtcacggctgacgccggcacccgcgccgtgcggctg
caggtggcggccgctcgccaggaagaaagcgggcagggcatcgcccggctccccaaggcg
accatgggccggcttggcattaccgaaggcgacatcgtctcgatcgagggtaagcgctcg
acggcggcgcgcgcggtcctggcctatgcggaggacgaagggctggaagtcatcaggctt
gatggcttgcagcgcgccaatgccggggtcggttcgggcgatcacgtccaggtcgatcgg
gccgaaagccgtccggcaacgcgggtggtgtttgccccggcacagcaggacatgcgcctg
cagggtccgggtcaggcgctgaagcgcaacttcttcggccggccactggtggcaggcgat
ctggttgccacgaccggtcagaccccggtgcgcgatatgccgccgcaggttgcgcggatg
ctgaatgccccagccttcgccctcacccagatccgtctgaccgtcgtctcgaccagcccc
aagggcatcgtccacatcgacgagaacaccgaggtcgaactgcgcgaggagtatgaagaa
gcgcgcggcagccgcggcgaggtcaattatgacgacgtcggcggcatgggcgatacgatc
cagcaattgcgcgaaatggtcgaactgccgctccgctatcccgaactgttcacgcgcctg
ggagtcgatccgcccaagggcgtgctgcttcacggtccgccgggaaccggtaagacgcgc
ctggcccgcgccgtcgcgaacgagagcgaagccagcttcttcaccatcaacggccccgag
atcatgggcagcgcctatggcgagagcgagcggcggttgcgcgaggtgttcgaggaagcg
gccaagtcctcgccctcgatcgtcttcatcgacgagatcgattcgatcgcgcccaagcgt
tcgcagtcccccggcgaggcggaaaagcggctggttgcccagctgctgacgctgatggac
gggctccacgcccgctcccacatcgtcgtgatcgcggcgaccaaccggcccgatgcgctc
gatgaggcgctgcgccgcccgggccgcttcgaccgcgagatcgtgattggcgtgcccgat
gaaagcggccgccgcgaggtgctgggcatccacacccggggtatgccgctgggtgacggg
gtcgatctcgacgaactggcccgcaccacccacggttttgtcggtgccgacatcgccgcg
ctggcccgcgaagccgcaatcgaggcggtgcggcgcatcatgccgcagcttgacctagag
gcgcagaccatcccgcctgaagtgctggagaagctggttgttacccgcgacgacttcctc
gcggcactgaagcgcgtccagccctcggcgatgcgcgaagtgatggtccaggtgccgaac
atcggctgggccgatatcggcggcgcggacgaggcgcaggaaaagctgaaggaagggatc
gagctaccgctcaagcatcccgaggcgttccgccgactgggcatccgcccggccaagggc
ttcctgctctatggcccgcccggcaccggcaagaccctgctggccaaggccgtcgccaag
gaaagtgaggcgaacttcatctcggtcaagagctcggacttgctctccaaatggtacggc
gaaagcgagcagcaattgtcgcgcctgttcgcccgcgcccgccaggtcgcgccctgcgtg
atcttcatcgacgagatcgacagcctggttccggcgcgcggcaccagcggcaacgagccg
caggtcaccgcgcgggtggtcaacaccatgctggccgaaatggacggaatggaagagctt
gcctcggtcgtgctgatcggcgcaaccaaccggccgggactggttgatccggcgctgctg
cgaccgggccggctggacgagctggtctatgtcggtacgcctgatgccaaaggccgcgag
catatcctcaagatccataccgggaagatgccgatggccagcgatgtcgatctgggcgcg
attgcgcgggaggccgagcgcttcaccggagcggacctggaagacgtggtgcgccgcgct
ggcctcaacgcgatccgccgcgccggggcggacgccgccgaggtgaacggagccgacttc
cgcgaggccctggccgattcgcgcgccaccgtttcagccgagatggagaccgaatacctc
aagatgaaaggcgagttgaagaagcgcgctgccgaggtaacctcgacccagatcggcttc
ctcgcgccggggatggtccaatccacccgcgaacggaagcacgactag
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