Novosphingobium ginsenosidimutans: FRF71_05740
Help
Entry
FRF71_05740 CDS
T06189
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRF71_05740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngf03019
]
FRF71_05740
Enzymes [BR:
ngf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRF71_05740
Messenger RNA biogenesis [BR:
ngf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRF71_05740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QEA15676
UniProt:
A0A5B8S2C5
LinkDB
All DBs
Position
1142622..1144292
Genome browser
AA seq
556 aa
AA seq
DB search
MTYFTDLGLAEPLVRALETKGYSDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFSLPS
LHRLAANPKARSNASCRMLVLSPTRELAAQIAENMRGYAKYLNLSVQCVFGGIPVGKQAR
ALVPGCDILVATPGRLLDLIDQRALTLRNVEIFVLDEADQMMDLGFIVPLKRVANMLPKE
RQSLFFSATMPKAIAELGKQFISNPVRVEVTPQATTAERVDQFITFVNQSEKQALLSLRL
RAGLADGSIERALVFTRTKHGADRVVRHLTTAGVNAAAIHGNKSQAQRTAALLAFRKGST
PVLVATDIAARGIDVTGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAQSFCAPDEKAY
LKDIERLTDVKLMPMPLPEDFQKEAARLPLPSRKPAEAEQDARREERDARGRGGQPRGGQ
GRGGRNNNRSPGGQSRDGQSRDQHHRNEHVRKEWAPREQRGPVFNPLAAEEREARQFGVM
PKAGANTAERRPAPTGDRRPAPTGDRRPVRQGERRDGPQGERRPAPHGGDRRPGGDRRDG
GRSGQGQFRGKSHNAR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacctattttaccgatcttggcctggccgagccgcttgtccgtgcgcttgagaccaag
ggctattccgatcccaccccgatccagcgccaggcgatcccggcgctgctcgaaggccgt
gacctgttgggcatcgcccagaccggcaccggcaagaccgccgctttctcgctgccttcg
ctgcaccgcctggcggccaatcccaaggcgcgcagcaatgcctcgtgccggatgctggtc
ctttcgccgacccgcgagctggccgcccagatcgccgagaacatgcgcggctatgccaag
tacctgaacctttcggtccagtgcgtgttcggcgggatccccgtcggcaagcaggcccgt
gcgctggttccgggctgcgacatcctggtcgccacccctggccgcctgctcgacctgatc
gaccagcgcgccctgacgctgcgcaatgtcgagatcttcgtgctcgacgaagctgaccag
atgatggacctgggcttcatcgtgccgctgaagcgcgtggccaacatgctccccaaggag
cgccagagcctgttcttcagcgcgaccatgcccaaggcgattgccgagctgggcaagcag
ttcatctccaacccggtccgggttgaagtgacgccgcaggccaccacggctgagcgcgtc
gatcagttcatcaccttcgtcaaccagagcgaaaagcaggcgctgctttcgctgcggctg
cgcgccggtctggccgatggttcgatcgagcgcgcgctggtcttcacccgcaccaaacac
ggggctgaccgcgtcgtgcgccacctgaccaccgccggcgtcaatgccgcggcgatccat
ggcaacaagagccaggcccagcgcaccgctgccctgctggccttccgcaagggcagcacc
ccggtgctggtggcgaccgacatcgccgcccgcgggatcgacgtgacgggcgtgagccac
gtgttcaactttgaactgcccaacgtgccggaacagtatgtccaccggatcggccgcacc
gcgcgcgccggcgccgatggcgtggcgcagagcttctgcgccccggatgaaaaggcctac
ctcaaggacattgagcgcctgaccgacgtcaagctgatgcccatgccgctgccggaagac
ttccagaaggaagccgcccgcctgccgctgccgagccgcaagccggccgaggccgagcag
gatgcccgccgcgaggaacgcgatgcccgcgggcgtggcggtcagccgcgcggcggccag
ggtcgcggcggtcgcaacaacaaccgcagccccggcggccagagccgcgacgggcagagc
cgcgatcagcaccatcgcaatgaacacgtccgcaaggaatgggccccgcgcgaacaacgc
ggcccggtcttcaacccgctcgccgcggaagagcgtgaagcccgccagttcggcgtgatg
cccaaagccggcgccaacaccgccgaacgccgaccggctccgaccggtgaccgtcgtccg
gccccgaccggggatcgccgtccggtccgtcagggcgaacgccgcgatggcccgcagggt
gaacgtcgtcccgctccgcatggcggcgatcgccgccccggtggcgatcggcgcgatggc
gggcgcagcggccagggccagttccgcggcaagagccacaacgcccgctaa
DBGET
integrated database retrieval system
