Novosphingobium ginsenosidimutans: FRF71_06135
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Entry
FRF71_06135 CDS
T06189
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRF71_06135 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngf03021
]
FRF71_06135 (rho)
03019 Messenger RNA biogenesis [BR:
ngf03019
]
FRF71_06135 (rho)
Transcription machinery [BR:
ngf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FRF71_06135 (rho)
Messenger RNA biogenesis [BR:
ngf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FRF71_06135 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
Spore_III_AA
NACHT
ATPase_2
S1CSD-TOTE-2
AAA_25
AAA
GpA_ATPase
AAA_14
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
QEA15750
UniProt:
A0A5B8S301
LinkDB
All DBs
Position
1211428..1212684
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKELKKKTPAELVEMAEELEVEAASTMRRQDLMFAILKELAEDGEEIIGQGTIEVLAD
GFGFLRSPEANYLAGPDDIYVSPNQVRKWGLRTGDTVEGEVRAPKDGERYFAITKLISIN
FDEPEVVRHRVNFDNLTPLYPDERLNLDTLDPTVKDKSARVIDIISPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLLVLLVDERPEEVTDMQRSVKGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVGKDKLSKMWVLRRILMQMGTIDAMEFLLDKMKDSKTNEDFFATMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttaaagaactcaagaagaaaacccccgccgagctggtcgagatggccgaagag
cttgaggttgaagccgcatcgacgatgcgccgccaggacctgatgttcgcgatcctcaag
gaattggccgaggatggcgaggaaatcatcggccagggcacgatcgaagtactggccgat
ggcttcggcttcctgcgcagcccggaagcgaactatctggctggtcccgacgatatctat
gtctcgcccaaccaggtccgcaaatggggcctgcgcaccggcgatacggttgaaggcgag
gtccgcgcccccaaggatggcgagcgctacttcgcgatcaccaagctgatcagcatcaac
ttcgacgagcccgaagtggtccgtcaccgcgtcaatttcgacaacctgaccccgctctac
ccggatgagcggctcaatctcgatacgcttgacccgacggtcaaggacaagtcggcccgc
gtgatcgacatcatcagcccgcagggcaagggccagcgcgccctgatcgtggcgccgccg
cgcaccggcaagaccgtgttgctgcagaatattgccaaggcgatcaccgacaatcatccg
gaagtgttcctgctggtcctgctggtcgatgaacggcccgaggaagtgaccgacatgcag
cgttcggtgaagggtgaggtgatctcttcaacctttgacgagccggcaacgcgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcttggtcgaacacaagcgcgacgtg
gtgatcctgttggattcgatcacgcgccttggccgtgcttacaacaccgtcgtgcccagc
tcgggcaaggtgctgaccggcggtgtcgatgccaacgccctgcagcgtcccaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggctcgctctcgatcatcgccacggcgctg
atcgataccggcagccgcatggacgaggtgatcttcgaagagttcaagggcaccggtaac
tcggaaatcgtgctcgaccgcaaggtcgcggacaagcgcatcttcccggcgctcgatgtc
ggcaagtccggcacccgcaaggaagagctgctggtcggcaaggacaagctcagcaagatg
tgggtcctgcgccgcatcctgatgcagatgggcacgatcgacgcgatggaattcctcctc
gacaagatgaaggattcgaagaccaacgaagacttcttcgcgacgatgaaccagtaa
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