Novosphingobium ginsenosidimutans: FRF71_07375
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Entry
FRF71_07375 CDS
T06189
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ngf
Novosphingobium ginsenosidimutans
Pathway
ngf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRF71_07375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngf03021
]
FRF71_07375 (rpoC)
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_07375 (rpoC)
Enzymes [BR:
ngf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRF71_07375 (rpoC)
Transcription machinery [BR:
ngf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRF71_07375 (rpoC)
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRF71_07375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Ins145_P3_rec
Motif
Other DBs
NCBI-ProteinID:
QEA15966
UniProt:
A0A5B8S365
LinkDB
All DBs
Position
1472096..1476385
Genome browser
AA seq
1429 aa
AA seq
DB search
MNDLTKFTNQMAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVIEPGLTPLEKYQLLTEDELYDYQDEYGEDAFSAG
IGAEAVKQMLMSLDLVQEKEDLLKELAETKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLDRDNEPGQGMMFADMAEVHQALEV
GAVTLHSKIVARVPQTDEQGNTFQKRFETTPGRMLIGECLPKSHTVPFDVINKVLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFKAGISFGKDDMIIPDSKDALVAETKELV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIKASPIDPETGRQKPINSIYM
MSHSGARGSPTQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVVIEDCGTERALEMRAIVQGGSTIASLGERILGRTL
AEDIADKDGAVIMAKGTLLDEAATAVVEGSGVQAVKIRSPLICEAEQGVCATCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSHLEAICDGTVVYRDIPTI
TDKRGRRLSLARNGEIVVMDTEGRERAMHKVPYGTHLLHENGAIISEGDRLAEWDPFTTP
VITEKPGIVKYQDLIDGRTMTEQTDEATGMSSRVVTENRSTSRSKKEDLRPRLTLLDDAS
GEAARYMMAPGTTLSVEDGQAVEAGDVLARASREAAKTRDITGGLPRVAELFEARIPKDN
AVIAKVSGRIEFVRDYKAKRKIAIIPEEGEPVEYLIPKSKTIDVQEGDWVKKGDNLISGS
PNPHEILEVLGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTL
LAGEQVDREEMDETNSKLAPGLKPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTQA
AVEGKRDSLIGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRASYRKLQESLIAPDS
AAEEHAAELAQGPEAAIGDDPLAMVEGETHGTDADAGDYLNPEAADGEE
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaagttcaccaaccagatggcgaagccggaaaccttcgaccagatc
cagatcggcctcgcttcgccggagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaacgatcaactatcggaccttcaagccagagcgtgacggcctgttctgcgcccgc
atcttcggtccggtgaaggactatgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtcaccaaggtgcgccgcgag
cgcatgggccacatcgaactggcggcgccggttgcgcacatctggttcctcaagtcgctg
ccctcgcgcattggcctgctgctcgacatgcagctcaagcagcttgagcgcatcctctac
ttcgagagctatgtggtgatcgagccgggcctgaccccgcttgagaagtaccagctgctg
accgaagacgaactctacgactaccaggacgagtatggcgaagacgccttctcggccggg
atcggcgccgaagccgtcaagcagatgctgatgagcctcgacctggtgcaggaaaaggaa
gacctgctcaaggaactggccgaaaccaagtcggaactgaagccgaagaagatcatcaag
cgcctgaaggtggtcgaatcgttcatcgattcgggcaaccgtccggaatggatgatcctc
gatgtcgtgccggtcattccgccggagctgcgcccgctggtgccgctggacggtggccgc
tttgcgacctcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaatcgcctg
aagcgcctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgttgacgcgctgttcgacaacggccgccgcggccgcgtgatcacgggtgcc
aacaagcgtccactgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttccgtgatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtcgaaaaggaacgcaaggaagtctgggacatccttgacgaggtgatccgcgaacac
ccggtgatgctgaaccgcgcaccgaccctgcaccgccttggcatccaggccttcgaaccg
gtcctgatcgagggcaaggcgattcagctccacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgttccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctgggcctgtactatctctcgctcgaccgcgacaac
gagccgggtcagggcatgatgtttgcagacatggccgaagtgcaccaggcgctcgaagtg
ggtgctgtgacgctccactcgaagatcgtcgcccgcgtgccgcagaccgacgagcagggc
aacaccttccagaagcggttcgagaccaccccgggccgcatgctgattggcgaatgcctg
cccaagagccacaccgtgccctttgacgtcatcaacaaggtgctgaccaagaaggaaatc
ggcgacgttatcgaccaggtctatcgtcacaccggccagaaggacaccgtcctcttcgcc
gacgcgatcatggccctgggcttccgtcacgcgttcaaggcgggcatcagcttcggcaag
gatgacatgatcatccccgacagcaaggatgcgctggttgccgaaaccaaggaactggtt
gccgactacgagcagcagtaccaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgctgcggtgaccaggtggccaacgccatgatggacgagatc
aaggcctcgccgatcgaccccgaaacgggccgtcagaagccgatcaactcgatctacatg
atgtcgcactcgggtgcgcgtggctccccgacccagatgaagcagctggcgggtatgcgc
gggctgatggccaagccttcgggcgagatcatcgagaccccgatcatctcgaacttcaag
gaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgctgaagaccgccaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcgtcgtcgtaatcgaggactgcggcaccgaacgcgcgctggaaatgcgggcg
atcgtgcagggcggttcgaccatcgcctcgctgggcgagcgtatcctgggccgtaccctg
gccgaagacattgccgacaaggacggcgctgtgatcatggccaagggcacgctgctggat
gaagccgcgaccgctgtggtcgagggttcgggcgtccaggccgtcaagatccgcagcccg
ctgatctgcgaagccgaacagggcgtctgcgcgacctgctatggccgcgatcttgcccgc
gggaccccggtcaacatcggtgaagcggtcggcgtcatcgctgcccagtcgatcggtgaa
ccgggcacccagctgaccatgcggaccttccacatcggtggcgcggcgcaggtcaacgag
cagtcgcaccttgaggcgatctgcgacgggaccgtggtctatcgcgacatcccgacgatc
accgacaagcgtggccgccgcctcagcctggcccgtaatggcgagatcgtggtgatggac
accgagggtcgtgagcgcgccatgcacaaggtgccctatggtacccacctgctgcatgag
aacggcgcgatcatcagcgaaggcgatcgcctggctgaatgggatccgttcaccaccccg
gtgatcaccgaaaagcccggtatcgtgaagtaccaggacctgatcgacggtcggaccatg
accgagcagaccgacgaagcgactggcatgtcaagccgtgtcgtgaccgagaaccgctcg
accagccgttcgaagaaggaagacctgcgtccgcgcctgaccctgcttgacgacgcctcg
ggcgaggccgcgcgctacatgatggcgcctggcacgaccctgtcggtcgaggatggccag
gcggttgaggccggtgacgtgctggcccgcgccagccgcgaagccgccaagacccgcgac
atcaccggcggtctgccgcgcgttgcggaactgttcgaagctcgcatcccgaaggacaac
gcggttatcgccaaggtctcgggccggatcgagttcgtccgcgattacaaggccaagcgc
aagatcgcgatcatcccggaagagggtgaaccggttgagtacctgatccccaagtcgaag
acgatcgacgtgcaggaaggtgactgggtcaagaagggcgacaacctgatctcaggctcg
ccgaacccgcacgagatcctggaagtgctcggggttgaggcgctggccgaatacctcgtc
gctgaaatccaggaagtctaccgactgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcagaaggttgagatcaccgacggcggcgacaccaccctg
ctggccggcgaacaggtcgaccgcgaggaaatggatgaaaccaactccaagctggctccg
ggtctcaagcccgcagaaggcaagccggtgctgctggggatcaccaaggcatcgctccag
acccgctcgttcatctcggcggcctcgttccaggagaccactcgcgtgctgacgcaggcg
gcggttgaagggaagcgcgacagcctgatcggtctgaaggaaaacgtgatcgttggccgt
ctcatccccgccggtaccggtgcgggcatgaaccgtctgcgcgttgccgcttccagccgc
gatgccgcgctgcgcgcgtcctatcgcaagctgcaggaaagcctgatcgcgcccgatagc
gccgcagaagagcacgcggctgaactggcccagggcccggaagccgcgatcggcgacgat
ccgctggcgatggtcgagggtgaaacccacggcaccgacgccgatgccggcgattacctg
aaccccgaagcggcggacggcgaggagtaa
DBGET
integrated database retrieval system
