Novosphingobium ginsenosidimutans: FRF71_11340
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Entry
FRF71_11340 CDS
T06189
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ngf
Novosphingobium ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
ngf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngf03032
]
FRF71_11340 (topA)
03400 DNA repair and recombination proteins [BR:
ngf03400
]
FRF71_11340 (topA)
Enzymes [BR:
ngf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FRF71_11340 (topA)
DNA replication proteins [BR:
ngf03032
]
Prokaryotic type
DNA Topoisomerases
FRF71_11340 (topA)
DNA repair and recombination proteins [BR:
ngf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FRF71_11340 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QEA16679
UniProt:
A0A5B8S533
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All DBs
Position
2295430..2297961
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AA seq
843 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGKDFTVLASYGHIRDLPPKDGSVRPDEDFAMDWELYGDKAS
RVKAITDAAKTADRLILATDPDREGEAISWHVQELLAKRKALPKDVQRVTFNAITKEAVT
TAMAQPRELDHDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLICQRE
HEIELFRPQEYWSVAAQLEHDGTAFTARLVKFDGEKLEKLSLGDQGSAERAKAAVEGGAF
RVEEVETRPTRRNPWPPFTTSTLQMEAARKLGFAAAHTMRVAQNLYEAGAITYMRTDGVQ
MDPSAISAARKAISDRYNNGHYLPEKPRHYETKAKNAQEAHEAIRPTDFGRDHFGSGDEA
RLYELIWKRAIASQMASAQIERTTVTLRDGTGRHELRATGQVVKFPGFLAVYDETLDQKP
GDDEDDSGLLPVMAKGDSPAKRGVEASQHFTQPPPRYSEATLVKRLEELGIGRPSTYAAT
IQVIKDRNYVRTEKNRFFAEESGRLLTAFLERFFPRYVAYDFTAGMEEELDDVSGGRAEW
KAVLAAFWKDFKPKSDEVMGQKPSEVTEALDEYLADYLFPAQEDGGDPRKCPNCGNGRLS
LRGGRFGAFVACSNYPECKFTRKFAQPGGNGGEADGEIGKHPETGEPISRKAGRFGPYIE
MGSGKEAKRSSIPKDIGELDLDWAVKLLSLPRTIGNHPESGEPITASLGRYGPYLAHQGK
YAKLRSTAEIFETGMNSAVAKLAEAASGGGRGARAVAEPLKTFGPHPESGGEMKLMAGRY
GPYVTDGTTNATLPRDKQPEALTAEEAATLITEKAAKGPAKKGGRKKAPAKKKAPAKKAA
KKS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcaacttgtcatcgtagaatccccggccaaggccaagaccatcgagaagtatctgggc
aaggatttcaccgtcctcgcctcctacggccacatccgcgatctgccgcccaaggacggc
tcggtccgcccggacgaggacttcgcgatggactgggaactctatggcgacaaggcgagc
cgggtgaaggcgatcaccgatgcggccaagaccgccgaccgcctgattctggccaccgac
cctgaccgcgagggtgaggcgatctcgtggcacgttcaggaactgctggccaagcgcaag
gcgctgccgaaggacgtccagcgcgtaaccttcaatgcaatcaccaaggaagccgtgacc
actgccatggctcagccgcgcgagctggatcatgacctgattgatgcctatctggcccgc
cgcgcgctcgattacctgttcggcttcacgctttcgccggtgctgtggcgcaagctcccc
ggggccaagagcgccggccgcgtccagtcggttgcgctccgcttgatctgccagcgtgag
catgagatcgagctgttccggccgcaggaatactggtcagtcgccgcgcagctggagcat
gacgggacggccttcaccgcccgcctggtcaagttcgatggcgagaagctggagaagctc
agcctgggcgaccaaggcagcgccgagcgggccaaggctgccgtcgagggcggagccttc
cgggtcgaggaggtcgagaccaggccgacccgccgcaacccctggccgccgttcaccact
tccaccctacagatggaagccgcgcgcaagctgggctttgccgccgcgcataccatgcgg
gtggcgcagaacctctatgaggccggcgcaatcacctacatgcggaccgacggggtgcag
atggatcccagcgccatttcggcggcgcgcaaggcgatcagcgatcgctacaacaatggc
cattacctgccagaaaagccgcgccattacgaaaccaaggccaagaatgcccaggaagcc
cacgaagcaatccggccgaccgatttcggccgcgatcacttcggcagcggcgacgaggcg
cggctttacgaactgatctggaagcgcgcgattgccagccagatggccagtgctcagatc
gagcgcaccaccgttaccctgcgcgacggaaccggcagacacgaactgcgcgccacgggc
caggtcgtaaagttccccggcttcctggctgtctatgacgaaacgctcgaccagaagccc
ggcgatgacgaagatgacagcggcctgctgccggtgatggccaagggtgacagcccggcc
aagcgcggggttgaggccagccagcacttcacccagccgccgccgcgctactccgaagca
acgctagtcaagcggctggaagaactcggcatcggccgcccttcgacctatgccgcgacg
attcaggtgatcaaggatcgcaactacgtccggaccgagaaaaaccgtttctttgcagag
gaatccggccgccttctcaccgcgttccttgaacgcttcttcccgcgctatgtcgcctat
gacttcaccgccgggatggaagaagagctggacgatgtctcgggcgggcgggctgaatgg
aaggccgtgctcgccgcattctggaaggacttcaagcccaagtcggacgaagtgatgggc
cagaagccgtccgaagtaaccgaggcgctggatgagtaccttgccgactatctgttccct
gcccaggaagacggcggcgatccgcgcaagtgcccgaactgcggcaatggccgcctgtcc
ctgcgcggcgggcggttcggggcctttgtcgcctgctcgaactatccggagtgcaagttt
acccgcaagtttgcccagcccggcggcaatggtggcgaggccgatggcgagatcggcaag
catcccgaaactggcgagccgatcagtcgcaaggctggccgctttggtccgtacatcgaa
atgggcagcggcaaggaagccaagcgcagttcgatccccaaggacattggcgagcttgat
ctcgattgggcggtcaagctgctcagcctgccgcgcacgatcggcaatcaccccgagtcg
ggcgaaccgatcacggccagcctcggccgctatggcccctacctggcgcaccagggcaag
tacgcgaagctgcgctccacggccgagattttcgagaccggaatgaacagcgccgtagcc
aagttggccgaggcggcgagcgggggtgggcgcggtgcgcgcgcggtggccgagccgctc
aaaaccttcggtccgcaccccgaaagcggcggcgagatgaagttgatggcgggtcgctat
ggtccttatgtcactgacgggacgaccaatgcgacattgccgcgggacaagcagcccgag
gccctgacggctgaggaagccgctacgctgatcaccgaaaaagctgccaagggcccagcc
aagaagggcggtcgcaagaaggctccggccaagaagaaggcaccagcaaagaaggccgcc
aagaagagctga
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