Neorhizobium galegae bv. orientalis HAMBI 540: RG540_CH11070
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Entry
RG540_CH11070 CDS
T03244
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ngg
Neorhizobium galegae bv. orientalis HAMBI 540
Brite
KEGG Orthology (KO) [BR:
ngg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ngg03016
]
RG540_CH11070
Enzymes [BR:
ngg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RG540_CH11070
Transfer RNA biogenesis [BR:
ngg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RG540_CH11070
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
CDN47295
UniProt:
A0A068SQD2
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All DBs
Position
complement(1064320..1065465)
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AA seq
381 aa
AA seq
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MIQTTAALEEACIQLAQSDFITIDTEFLRETTFWPELCLIQMASPTVEVLVDPLAKGLDL
KPFFELMANPAVTKVFHAARQDIEIVYHLGNLVPHPIFDTQVAAMVCGFGDSVSYDQLVN
RIKGENLDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLFLKAQLEREGRALWLTEEM
AVLESPGTYDLHPDDAWARLKSRLRKPTELAVLKFVAAWREREARSRNVPRSRVLKDDAI
YEIAQQQPKDVEAMSRLRTIPKGWERSASGAAIIEAVNAALALPKTEMPHAPKHVHVPEG
TAAAVELLKVLLKLISDKQGVAAKIIANTDDLERIAAEGEAAEVGALSGWRRDLFGETAL
KLISGGVALRFVNKKVEAVEL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgatccaaacgaccgccgcactcgaagaagcctgcatccagctggcccaatcggacttc
atcaccatcgacaccgagttcctcagggaaacgaccttctggcctgagctgtgcctcatc
cagatggcgagcccgactgtcgaagtccttgtcgatccgctcgccaagggcctggacctg
aaacccttcttcgagctgatggccaatcccgccgtcactaaggtgtttcacgccgcccgc
caggatatcgaaatcgtctaccatctcggcaatctggtgccgcatccgatcttcgacacc
caggtcgccgccatggtctgcggcttcggggactcggtctcctatgaccagctcgtcaac
cgcatcaagggcgagaatctcgacaagtcgtcgcgcttcaccgactggagccgccggccg
ctttccgacaagcagctcgaatatgcgctggccgacgtcacccatctgcgtgacgtctat
ctcttcctcaaagcccagctcgaacgcgaaggccgcgccctgtggttgaccgaggaaatg
gccgtgctggaatctcccggcacctatgacctgcatccagacgacgcctgggcccgcctc
aagtcgcgcctgcgcaagccgactgagctcgctgtcctgaaattcgtcgctgcctggcgc
gagcgcgaagcgcgcagccgcaacgtaccgcgttcccgcgtgctgaaggacgatgcgatc
tacgagatcgcccagcagcagccgaaggatgtggaggccatgtcgcggcttcgcaccatc
ccgaagggctgggagcgttctgcctccggcgccgccatcatcgaagcggtcaacgcagca
cttgccctgccgaagaccgagatgccgcatgcgccgaaacatgtgcatgtcccggaaggc
accgccgccgcggtcgagctgctcaaggttctcctgaagctgatctccgacaagcagggc
gtcgccgccaagatcatcgccaataccgacgatctcgaaaggatcgccgccgaaggcgag
gccgccgaggtcggagccctttccggctggcgtcgcgatctcttcggcgaaaccgccctg
aaactgatcagcggcggcgtggcgttgcgcttcgtcaacaagaaggtcgaggcggtggag
ctttag
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