Neorhizobium galegae bv. orientalis HAMBI 540: RG540_CH30120
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Entry
RG540_CH30120 CDS
T03244
Name
(GenBank) Dead-box protein, ATP-independent rna helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ngg
Neorhizobium galegae bv. orientalis HAMBI 540
Pathway
ngg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RG540_CH30120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngg03019
]
RG540_CH30120
03009 Ribosome biogenesis [BR:
ngg03009
]
RG540_CH30120
Enzymes [BR:
ngg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RG540_CH30120
Messenger RNA biogenesis [BR:
ngg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RG540_CH30120
Ribosome biogenesis [BR:
ngg03009
]
Prokaryotic type
rRNA helicases
RG540_CH30120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
Motif
Other DBs
NCBI-ProteinID:
CDN49177
UniProt:
A0A068SS93
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All DBs
Position
complement(2998225..3000159)
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AA seq
644 aa
AA seq
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MTDYNGAVPAIAKALAKRGYVTLTPVQKSMLDPALTFSDALVSAQTGSGKTVAFGLAIAP
TLLGDAEKFGPARQPLALVIAPTRELAMQVTRELEWLYEMTGAVITSCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIRRNALDMSALKVAVLDEADEMLDLGFREDLEFILDSAPAER
RTLMFSATVPAAIAKLAKSYQRDAVRIATSAEEKQHVDIEYRALAVASADRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPSNPETLLHRSGRTGRAGRKGISALIVPVNARRKAERLL
AGAGISATWDRPPSAEDVMRRDDERLLADPIFSEKPREEEQDLIAKLVASHGAEKLASAF
VNLYRTKYSAPEDLIEISVQQDTRKPRERAGGEGDFPMTPRPSRDEFGPAIWFSLSVGRK
QNAEPRWLIPMLCRNGNVTKREIGAIKMQQDETFVEIAADHADAFMQAVGKDKALERGIR
VTRLTSAPDLSRPAPAKPYVKKSYDDRPKEPHGDDWAKGKPRKNTSNAAGPGGPKAAEAR
DGKPFNKDAKPFRKDAQPFKKDDKPFKKKDKPKLANSSNFERRK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattacaacggcgccgtcccggcgatcgccaaggcgttggcgaagcggggctat
gtaacgctgacccccgtccagaaatccatgctcgaccccgcgctcaccttctccgacgcg
ctggtttcggcgcagaccggctcgggcaagaccgttgccttcggccttgcgatcgcaccg
acattgctcggcgacgcggaaaaattcggcccggcgcggcagcccttggcgctcgtcatt
gccccgacccgcgaactggcgatgcaggtcacccgcgagctggaatggctttacgagatg
accggcgcggtcatcaccagctgcgttggcggcatggacatccgcagcgaacggcgcgcg
cttgagcgcggcgcccatatcgtcgtcggcacgcccggccgcctttgcgaccatatccgc
cgcaatgcgctcgacatgtcggccctcaaggtcgccgtgctcgacgaggcggacgagatg
ctcgatctcggtttccgcgaggacctggaattcatcctggactcggcccctgccgagcgc
cgcacgctgatgttctcggcgaccgtgcctgccgccatcgccaagctcgccaagagctat
cagcgcgacgcggtccgtatcgctacctctgccgaggaaaagcagcatgtcgatatcgag
tatcgcgcgcttgccgtcgcatcggccgaccgcgaaaatgcgatcatcaacgtgcttcgt
tattacgaagcgaccaacgcgatcgtgttctgctcgacccgtgcggccgtcaatcatctg
acggcccggttcaacaaccgcaatttcgctgtcgtggcgctctccggcgagctgacgcag
aacgagcggacccatgcgctgcaggcgatgcgcgatggccgcgcccgcgtctgcatcgcg
accgacgtcgccgcccgcggcatcgacctgccgggtctcgacctcgtcatccatgccgac
ctgccgagcaatccggaaacgctgcttcaccgcagcggccgaaccggccgcgccggacgc
aagggcatcagcgcgctgatcgtgccggtcaacgcccgccgcaaggccgagcgcctgctg
gcgggtgccggtatttccgccacttgggaccgtccgccgtctgccgaagatgtgatgcgc
cgcgacgacgagcgtctgctggccgatccgatctttagcgaaaagccgcgcgaggaagaa
caggacctcatcgcaaagctggttgcgagccatggcgcggaaaagctggcgtccgccttc
gtcaatctctaccgcaccaaatattcggcgcccgaggatctgatcgagatctcggtgcag
caggatacccgcaagccgcgcgagcgcgccggcggcgagggcgatttcccgatgaccccg
cgcccgtcgcgcgacgagttcggcccggccatatggttctcgctatcggttggccgcaag
cagaatgccgagccgcgctggctgatcccgatgctctgccgcaacggcaacgtcaccaag
cgtgagatcggcgcgatcaagatgcagcaggacgagaccttcgtcgagatcgccgccgat
catgccgacgccttcatgcaggcggttggcaaggacaaggcgctggaacgcggcatccgc
gtcacccggctgaccagcgccccggacctcagccgtccggcaccggccaagccctatgtc
aagaagtcctacgacgatcgcccgaaagagcctcacggcgatgactgggcgaagggcaag
ccgcggaagaatacgtccaacgcggcaggccctggcggccccaaggcagccgaggcacgc
gacggaaagcccttcaacaaggatgccaagccgtttcgcaaggacgcccagcccttcaag
aaggacgacaagcctttcaagaagaaggacaagccgaaactggccaacagcagcaatttc
gagcgccggaagtag
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